Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1271 ATGGATTCAAATTCTCACCCTCCTTCAGATCCTCCTCCAATCACCAACGGTAATGGCACCACCGCCACCGACACGTGCCATGTCACCACTCACCCGATCCAATCTGATACCGCCGGCAACACTCGCAGCGGCGCCGATAAGGATCAATCCGGTGGCGAGGGAGAGAACACTAGCAAGCGCCGCCGCCGCAAATCCCGGTGGGACCCTCCGCCCGAGTCCAACAACTCTGACACCGAATCGGCCGGTACCGGAACAACCACGAAGAAGAGGAAATCGCGTTGGGCGGATGATGAACCGAAACCGGTGATCCAGCTTCCTGGATTCATGGTAGGTATCGAATTCGATCCCGAAATTCAAGCATTGAATAGTAGGCTTTTAGAAATTAGTAGAATGTTGCAAACAGGTTTACCTTTAGATGATAGACCCGAAGGTGCTCGATCACCTTCGCCCGAACCGGTTTATGATAACATGGGAATTAGAATTAATACTAGAGAGTTTCGTGCTCGCGAGAGATTGCAAAAAGAGAAGCAAGAAGTTATATCTCAGATTATAAAGAGAAACCCTGCGTTTAAACCGCCTGCGGATTATAGGCCGCCTAAGGTTCAGAAGAAGCTTTATATACCGATGAAAGAGTACCCTGGTTATAATTTCATTGGGCTGATTATTGGTCCGAGAGGTAACACACAGAAGAGGATGGAGAAAGAAACCGGTGCAAAAATTGTGATTCGTGGGAAAGGATCGGTGAAAGAAGGTAGGTTGCAGCAGAAGAGGGATTTGAAACATGATCCTTCTGAGAATGAGGATTTGCATGTTTTGGTGGAGGCGGACACACAGGAAGCGGTAGATGCTGCTGCTGGTATGGTGGAGAAGCTATTGCATCCTGTGGATGAGGTGCTGAATGAGCATAAGAGGCAACAACTTAGGGAACTTGCGGCGTTGAATGGGACAATTAGGGATGAAGAGTTTTGCCGGTTGTGTGGCGAGCCTGGTCATCGTCAGTATGCATGTCCTACGAGGACTTCAACGTTTAAGAGTGAAGTTGTGTGTAAGCATTGTGGGGATGGTGGTCATCCAACTATAGATTGTCCAGTGAAGGGTGGTACTGGGAAAAAGATGGACGATGAGTATCAGAACTTCCTTGCAGAGTTGGGAGGTTCAGTTCCTGAATCTGCAATAAAACAAACTAGTACTTTGGCAATTGGTTCAGGCGGTGCTGGAACCAATCCTCCTTGGGCTTCAAAAAATTCTGGTGATACACCACAAGCTGGCTTAGGGGCTAGTGCAGTTAAAAAGGAAATTGACGATACGAATTTGTACATTGGGTATTTGCCACCCACCCTTGAAGATGATGGTCTAATCCAATTATTTCAACAATTTGGTGAGATTGTCATGGCAAAAGTTATCAAGGATCGAGTTACAGGTTTCAGTAAAGGATACGGGTTTGTGAAGTATGCTGATGTTCAAATGGCAAACAATGCAATTTTGGCTATGAATGGCTATCGTCTTGATGGTCGGGCCATAGCAGTGAGAGTTGCTGGTATAATTCCTCAGCCTGTTGTACCACCTGGCCCACCTGCATCTGTTGTCCCTACTTATCCTATTCCAAGCCAGCCACTTGGTGCCTATCCATCCCAACAATATGCTGGTGGTGGTCTCCTTGGGAGTGATATCCCTGGGAGTTATGGTGGTACCCCAGTTCCATGGGGACCCCCTGTTCATCCTCCATACGCCCCTTATGCTCCACCTCCACCTGGATCGACCATGTATCCTCCTTTCCAAGGTCAACCTATGCCTCCTTATGGTGTTCAATATCTTCCTATCAAGACAGGACCCCCTGGTACCCAATCACAGCCTGCAACTTCTAGTGAAGTGCAGCAGAGTTACCCTCCTGGAGTGCAATCTGACAGTAGCACCTCTACTCACTCTGTACCAGCCGATATGTATGGGAACTTGGTACCTTCAATGCCACCAGCATCTCTGCCTACATATCCTGCATCTTATGGTTATCCACGGTACTACAGTGCAGTTCCTCCACCCCCTGTTCCTGTCTCGACTTCAGATCAATCCCCCAGCATTGTGAATGTGCCTTGGGCCAGTAATCCTCCGGTGCCCCCTCCTACTGCATCTACAGGTCAACTCCAAAGCATTGGAAATGTGCCTTGGGCCACTAATCCACCAGTGCCTCCTCTTGCTGCATTATCTGAAAAGACATCATCACACGGTGCAGATTCAGAGTATGAGAAGTTCATGACAGAGATGAAATGA 2265 0.4812 MDSNSHPPSDPPPITNGNGTTATDTCHVTTHPIQSDTAGNTRSGADKDQSGGEGENTSKRRRRKSRWDPPPESNNSDTESAGTGTTTKKRKSRWADDEPKPVIQLPGFMVGIEFDPEIQALNSRLLEISRMLQTGLPLDDRPEGARSPSPEPVYDNMGIRINTREFRARERLQKEKQEVISQIIKRNPAFKPPADYRPPKVQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKHDPSENEDLHVLVEADTQEAVDAAAGMVEKLLHPVDEVLNEHKRQQLRELAALNGTIRDEEFCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPTIDCPVKGGTGKKMDDEYQNFLAELGGSVPESAIKQTSTLAIGSGGAGTNPPWASKNSGDTPQAGLGASAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRVTGFSKGYGFVKYADVQMANNAILAMNGYRLDGRAIAVRVAGIIPQPVVPPGPPASVVPTYPIPSQPLGAYPSQQYAGGGLLGSDIPGSYGGTPVPWGPPVHPPYAPYAPPPPGSTMYPPFQGQPMPPYGVQYLPIKTGPPGTQSQPATSSEVQQSYPPGVQSDSSTSTHSVPADMYGNLVPSMPPASLPTYPASYGYPRYYSAVPPPPVPVSTSDQSPSIVNVPWASNPPVPPPTASTGQLQSIGNVPWATNPPVPPLAALSEKTSSHGADSEYEKFMTEMK 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1271 754 CDD SF1_like-KH 202 318 - -
Lal21g1271 754 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 436 514 IPR000504 GO:0003723
Lal21g1271 754 MobiDBLite consensus disorder prediction 1 101 - -
Lal21g1271 754 ProSiteProfiles Zinc finger CCHC-type profile. 349 363 IPR001878 GO:0003676|GO:0008270
Lal21g1271 754 MobiDBLite consensus disorder prediction 401 422 - -
Lal21g1271 754 ProSiteProfiles Zinc finger CCHC-type profile. 323 337 IPR001878 GO:0003676|GO:0008270
Lal21g1271 754 MobiDBLite consensus disorder prediction 740 754 - -
Lal21g1271 754 MobiDBLite consensus disorder prediction 247 266 - -
Lal21g1271 754 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 438 507 IPR000504 GO:0003723
Lal21g1271 754 MobiDBLite consensus disorder prediction 727 754 - -
Lal21g1271 754 SMART c2hcfinal6 348 364 IPR001878 GO:0003676|GO:0008270
Lal21g1271 754 SMART c2hcfinal6 322 338 IPR001878 GO:0003676|GO:0008270
Lal21g1271 754 Pfam KH domain 216 289 IPR004088 GO:0003723
Lal21g1271 754 MobiDBLite consensus disorder prediction 48 70 - -
Lal21g1271 754 SUPERFAMILY RNA-binding domain, RBD 432 512 IPR035979 GO:0003676
Lal21g1271 754 PANTHER RNA-BINDING PROTEIN RELATED 38 702 IPR045071 -
Lal21g1271 754 PANTHER RNA-BINDING PROTEIN RELATED 701 754 IPR045071 -
Lal21g1271 754 MobiDBLite consensus disorder prediction 606 644 - -
Lal21g1271 754 SUPERFAMILY Retrovirus zinc finger-like domains 319 365 IPR036875 GO:0003676|GO:0008270
Lal21g1271 754 Gene3D - 407 514 IPR012677 -
Lal21g1271 754 SMART rrm1_1 437 510 IPR000504 GO:0003723
Lal21g1271 754 Gene3D K Homology domain, type 1 198 320 IPR036612 GO:0003723
Lal21g1271 754 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 201 327 IPR036612 GO:0003723
Lal21g1271 754 MobiDBLite consensus disorder prediction 84 98 - -
Lal21g1271 754 Gene3D - 115 193 - -
Lal21g1271 754 MobiDBLite consensus disorder prediction 401 425 - -
Lal21g1271 754 ProSiteProfiles Type-1 KH domain profile. 216 288 - -
Lal21g1271 754 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 701 754 - -
Lal21g1271 754 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 38 702 - -
Lal21g1271 754 Pfam Splicing factor 1 helix-hairpin domain 90 197 IPR032570 -
Lal21g1271 754 Gene3D - 321 374 - -
Lal21g1271 754 MobiDBLite consensus disorder prediction 15 47 - -
Lal21g1271 754 SMART kh_6 201 293 IPR004087 GO:0003676
Lal21g1271 754 MobiDBLite consensus disorder prediction 609 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1271 Lal-Chr21 15947803 15950067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1271 436 547 Eukaryotic Initiation Factors Gene Family AT3G16380 31.933 2.00e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1271 K13095 - gmx:100800982 1104.35