Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1264 ATGGATTCTGAAATCCCAAACAAAGCCTTAACAAGCACTCGTTTTTCTGAGTTGAACCCATCACTCTCCGACCCAGTTCTCAATGCCCTATCAAATTCCGGCTTCAATTTCTGCACTCCGGTTCAAGCCGCCACCATTCCTCTACTCTGCACCTTCAAAGACGTCGCCGTCGACGCCGCCACCGGTTCCGGTAAAACCCTAGCTTTCGTTGTTCCTCTTGTTGAGATTCTTCGCCGCTCTTGTCCTCACCCTAAGCCTCATCAGGTGCTAGGAATAATCATATCTCCTACGAGGGAGTTATCGTCTCAAATATATCATGTTGCACAACCTTTCATTTCAACTTTGGTGGATGTTAAGTCCATTCTCCTTGTTGGAGGGGCTGAAGTAAAAGCAGACATGAAGAAAATAGAGGAAGAAGGAGCAAACATATTGATTGGAACGCCTGGGCGGCTATACGACATAATGAATCGGGTGGATGGCCTCGATTTTAAAAGCCTTGAGATTTTGATTTTAGATGAAGCTGATAGACTCCTAGATATGGGATTCCAAAAGCAGATAACTTCCATCATATCTCTTTTGCCCAAGCTTCGGAGAACTGGTCTATTCTCTGCTACTCAGACTGAGGCTGTTGAAGAACTTGCTAAAGCAGGATTGAGGAACCCTGTGAGAGTTGCAGTTCGGGCTGAAGCTAAATCAACCGATGATCCTGCAGCATCAAAACAATTAGAATCTTCAAAGACACCTTCAGGACTTCACATTGAGTATGTGGAATGTGAGGCAGACAAGAAGCCATCGCAGCTAGTAGACATCCTTATTAAGAACCGCTCAAAAAAAGTTATAATATATTTCATGACTTGTGCTTGTGTTGACTACTGGGGAGTTGTACTTCCTCGTCTTTCTGTTTTGCAAGGCTTCTCCTTGATCTCCCTTCACGGCAAGATGAAACAGACTATCAGGGAGAAAGCATTAGCTTCATTCACATCCCTTTCAAATGGAATTCTTCTATGTACTGACGTTGCAGCACGTGGTCTTGACATACCGGGCGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCGTACATAGAGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGACATGCTGTTGTGTTCTTATTGCCTAAGGAAGAATCTTATGTGGAATTTCTGCGTATAAGAAGAGTTCCTCTTCAAGAGAGAACCTGTTCTGATGATGCACCTGATGTTGTTCCTCAGATACGTTCTGCTGCTAGAAAAGATCGTGATATAATGGAGAAAGGAGCGAGGGCATTTGTTTCTTACATGCGTGCTTATAAAGAGCATCACTGCTCATATATTTTTAGATGGAAAGAACTTGAAATCGGTAAACTGGCCATGGGATTTGGCCTATTGCAACTTCCTTTAATGCCAGAGGTTAAGCACCACAAACTTTCCACTGAGGGATTTGTACCAGTTGAAGATATCAAGTTGGAGGACATCAAGTTCAGGGATAAATCGCGTGAGAAACAAAGGAAAAAGAACTTGCAAGCAAAGAAAGAGGCCAAAGAGAAAGAGGTAAAACCTAAAAAACCAACCAAAACCCCAAATTCATCTACTGTCATGAGGAAGAAAACAGCCAAACAGAGGCGTGCTCAGCAGACAGCTGAAGATGAGGAAGAGTTGACGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGACTATAGATGAGAATGAATATGCTAAGTTGACGGGCACCGAGGAATTGCTTTGA 1770 0.4328 MDSEIPNKALTSTRFSELNPSLSDPVLNALSNSGFNFCTPVQAATIPLLCTFKDVAVDAATGSGKTLAFVVPLVEILRRSCPHPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVDVKSILLVGGAEVKADMKKIEEEGANILIGTPGRLYDIMNRVDGLDFKSLEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVAVRAEAKSTDDPAASKQLESSKTPSGLHIEYVECEADKKPSQLVDILIKNRSKKVIIYFMTCACVDYWGVVLPRLSVLQGFSLISLHGKMKQTIREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERTCSDDAPDVVPQIRSAARKDRDIMEKGARAFVSYMRAYKEHHCSYIFRWKELEIGKLAMGFGLLQLPLMPEVKHHKLSTEGFVPVEDIKLEDIKFRDKSREKQRKKNLQAKKEAKEKEVKPKKPTKTPNSSTVMRKKTAKQRRAQQTAEDEEELTQEYRLLKKLKKGTIDENEYAKLTGTEELL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1264 589 Coils Coil 503 525 - -
Lal21g1264 589 MobiDBLite consensus disorder prediction 504 529 - -
Lal21g1264 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Lal21g1264 589 CDD SF2_C_DEAD 254 384 - -
Lal21g1264 589 Pfam Domain of unknown function (DUF4217) 416 473 IPR025313 -
Lal21g1264 589 MobiDBLite consensus disorder prediction 504 559 - -
Lal21g1264 589 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Lal21g1264 589 Gene3D - 253 480 IPR027417 -
Lal21g1264 589 SMART ultradead3 34 254 IPR014001 -
Lal21g1264 589 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Lal21g1264 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Lal21g1264 589 PANTHER RNA HELICASE 23 587 - -
Lal21g1264 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Lal21g1264 589 CDD DEADc_DDX55 26 224 - -
Lal21g1264 589 Gene3D - 2 227 IPR027417 -
Lal21g1264 589 SMART helicmild6 290 375 IPR001650 -
Lal21g1264 589 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 23 587 - -
Lal21g1264 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Lal21g1264 589 Coils Coil 539 569 - -
Lal21g1264 589 SMART DUF4217_3 413 476 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1264 Lal-Chr21 15867785 15872634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1264 17 389 Eukaryotic Initiation Factors Gene Family AT1G72730 29.412 2.07e-44 161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1264 21 15867785 15872634 Lal21g1264 21 15867785 15872634 ECH