Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1261 ATGAGTAGTAAAAAATGGAATTTCAATTGCTTTAAGGATCAAAATGGATTTTTTTACCTTCTATCTTTGTGTGTATTGCTTCAGAGCTTTGGCTTTTGTTGCTCTTTGAATGAAGAAGGTAAAGCACTTTTGAAGTTGAAGCAGAGAATAGTGAGTGACCCTTTTGGTGCTTTGTCAAATTGGGTTGATGATGAAGTAACAGTTGACCCTTGTAATTGGTTGGGAGTTGAATGCTCAGAAGGAAGAGTGATTGTGTTGAATTTGAAAAACCATTGTCTTGGAGGAAGTCTAGCACCCGAGCTCGCGAATCTTGTCAACATAAAGTCTATTATTTTGCGGAACAATTCTTTTTATGGGATCATCCCTGGCAGAATTGTGCAATTGAAAGAATTGGAGGTTTTGGATTTAGGCTACAACAATTTCAGTGGACGCCTACCTACAACAACTTCACTCACAACCCTCTTGCTGGATAACAATTATCTCCTTGGAAGTTTATCTCCTGAAAGTCGAGTAGACGAAAACCATCTAACTAGTACAGATAAAATGCCGGCTGTGTGGTTCGTTTCTCTTCAGTCTAAAGATATTATAAGCTACAACTCAGGGCGTGTTGGTCAAAATAAAAAAGCTCGCCGGAGCCTGCTGCAATCTCGTATTCAGGAACACGGTGATATTCATAATCGTGTAACCTATTTTCCTGATACCCCGGCTCCATCCTCTGCGCCATCCCCAGATTCTCTTCCAGCTGCACCACCAATAGTGCCGAAGCCAGCTTCCCCTGAAAGAACTGATTATGATTCTCCTTCTCCCCTGCCTATGCCAGGTTCTCCAGCCCAATCTATAATTAGCTCATCAAAGAACAACCATATCGCTATTATAGCCGGAGTTGGAGGTGGTGTTCTATTTCTTATTATTTCAAGCATTGGCATATATCTATGTAAAACCGACAAGGTAGCTACTGTAAGACCTTGGGCGACAGGATTAAGTGGACAGCTTCAGAAGGCATTTGTGACAGGTGTGCCGAAGCTAAAGAGATCAGAACTTGAAGCAGCATGTGAAGATTTTAGTAATGTACTTGGTACTTCATCCATTGGTACAGTGTATAAAGGGACTTTATCTAGCGGTGTTGAAATAGCAGTGGCGTCTGTTTCATTGGATTCATCTAATAATTGGTCAAGAACTTCAGAAACCCAATTTAGGAAGAAGATAGATGCATTATCAAAAGTGAACCATAAGAATTTTGTAAATCTGCTTGGATATTGTAGAGAAGACAAGCCTTTCACCAGAATGGTGGTCTTTGAATATGCGCCAAATGGAACACTCTTCGAGCATTTACACATACAAGAAGCCGAGCATTTGGATTGGGGAACGAGACTTCGAGTTGCCATGGGCATGGCTTACTGTCTGCAACATATGCACCAGTTGGACCCTCCTTTGCCACATAGCAACTTTAATTCTTCGGCTGTCCAACTCACCGATGACTATGCTGCCAAAATCTCCGATCTGAGTTTCTTGAATGAAATAGGAAAACCCGAGAAAAAATCCGGTGCTAAAAAACATATCGAAATGACATTAGCAAGTAATGTATACAGTTTTGGTGTCATACTATTCGAGATGGTAACAGGCAGGCTCCCTTATTCAGTGGATAACAATGGCTCACTTGAAGATTGGGCTTCACACTATTTACAAGGCGACCAGCCGATCAAAGAAATGGTCGATCCAACTCTAGATTCCGTCGATGTCGAAAAGCTTGAACAAGTTGCTGTTTTGATTAAATCTTGTGTCCACCAAGATCCACAGCAGAGACCAACAATGAAAGAAGTTAGTGTCAAGTTGAGAGATATAACAAACATAACACCTGAAGTAGCTGTTCCAAAGCTTTCTCCACTTTGGTGGGCAGAACTTGAGATTGGTTCTGCAGATGCAAGCTGA 1929 0.4137 MSSKKWNFNCFKDQNGFFYLLSLCVLLQSFGFCCSLNEEGKALLKLKQRIVSDPFGALSNWVDDEVTVDPCNWLGVECSEGRVIVLNLKNHCLGGSLAPELANLVNIKSIILRNNSFYGIIPGRIVQLKELEVLDLGYNNFSGRLPTTTSLTTLLLDNNYLLGSLSPESRVDENHLTSTDKMPAVWFVSLQSKDIISYNSGRVGQNKKARRSLLQSRIQEHGDIHNRVTYFPDTPAPSSAPSPDSLPAAPPIVPKPASPERTDYDSPSPLPMPGSPAQSIISSSKNNHIAIIAGVGGGVLFLIISSIGIYLCKTDKVATVRPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVLGTSSIGTVYKGTLSSGVEIAVASVSLDSSNNWSRTSETQFRKKIDALSKVNHKNFVNLLGYCREDKPFTRMVVFEYAPNGTLFEHLHIQEAEHLDWGTRLRVAMGMAYCLQHMHQLDPPLPHSNFNSSAVQLTDDYAAKISDLSFLNEIGKPEKKSGAKKHIEMTLASNVYSFGVILFEMVTGRLPYSVDNNGSLEDWASHYLQGDQPIKEMVDPTLDSVDVEKLEQVAVLIKSCVHQDPQQRPTMKEVSVKLRDITNITPEVAVPKLSPLWWAELEIGSADAS 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1261 642 Gene3D Ribonuclease Inhibitor 34 220 IPR032675 -
Lal21g1261 642 ProSiteProfiles Protein kinase domain profile. 352 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g1261 642 Pfam Leucine rich repeat N-terminal domain 37 79 IPR013210 -
Lal21g1261 642 Pfam Protein tyrosine and serine/threonine kinase 354 610 IPR001245 GO:0004672|GO:0006468
Lal21g1261 642 SUPERFAMILY L domain-like 38 168 - -
Lal21g1261 642 MobiDBLite consensus disorder prediction 229 279 - -
Lal21g1261 642 CDD TM_EGFR-like 289 311 - -
Lal21g1261 642 PANTHER BNAA09G55080D PROTEIN 3 642 - -
Lal21g1261 642 MobiDBLite consensus disorder prediction 236 257 - -
Lal21g1261 642 Gene3D Transferase(Phosphotransferase) domain 1 435 622 - -
Lal21g1261 642 PANTHER PROTEIN MALE DISCOVERER 2 3 642 - -
Lal21g1261 642 Gene3D Phosphorylase Kinase; domain 1 325 434 - -
Lal21g1261 642 SUPERFAMILY Protein kinase-like (PK-like) 335 608 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1261 Lal-Chr21 15828115 15832417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1261 17 607 Receptor kinase-like Gene Family AT5G16000 26.709 6.60e-53 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Lal21g1261 PK_Tyr_Ser-Thr 1.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1261 - - gmx:100784541 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1587 4 20041217 20045601 Lal21g1261 21 15828115 15832417 LSH
Lal21g1261 21 15828115 15832417 Lal17g1585 17 17264554 17269566 LSH