Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1248 ATGGCTTCTTCCATTTCATCTTCAACTCCACGTTCCATTGATGAGATCTTCAATGATTTCACTTCTCGTCGCACTGCTATTCTTCGTGCACTCACTTATGATGTTGATGAGTTCTATTCCCTCTGTGATCCTGAGAAAGAGAACATGTGCTTATATGGGCTTTCCAATGAGTCATGGGAGGTTACTCTGCCAGCAGAAGAAGTTCCACCAGAACTTCCAGAACCAGTGTTGGGGATCAATTTTGCTAGAGATGGGATGAACCGTAAAGATTGGCTTTCTTTGGTTGCTGTGCACAGTGATTGCTGGTTGAACTCTGTGGCATTCTATTTTGGAGCCAGACTAAATAGAAATGAGAGGAAGCGCCTATTCAGCCTGATGAACGAGCTGCCAACTATCTTTGAAATTGTATCGGGAAGGAAACCTCTGAAAGACAAGACCACCACGACAGATAGTGGTAGCAAATCTCGGGGCAGCTTAAAGAGATCGAATGAAGGACAAGTGAAGAGCAATTCGAAGTTACCCGATGAAAGTAATGGTGAGGAAGAGGAGCACGGCGAAACCCTTTGTGGAAGCTGTGGTGGAAATTACAGTGGTGATGATGAGTTCTGGATTGGTTGTGACATATGTGAAAGATGGTATCATGGGAAGTGTGTTAAGATCACTCCAGCAAAGGCTGATAGTATTAAACAATACAAATGCCCTTCTTGTAACTCCAAGAAGGGTAAGCAGTAA 732 0.4372 MASSISSSTPRSIDEIFNDFTSRRTAILRALTYDVDEFYSLCDPEKENMCLYGLSNESWEVTLPAEEVPPELPEPVLGINFARDGMNRKDWLSLVAVHSDCWLNSVAFYFGARLNRNERKRLFSLMNELPTIFEIVSGRKPLKDKTTTTDSGSKSRGSLKRSNEGQVKSNSKLPDESNGEEEEHGETLCGSCGGNYSGDDEFWIGCDICERWYHGKCVKITPAKADSIKQYKCPSCNSKKGKQ 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1248 243 ProSiteProfiles Zinc finger PHD-type profile. 186 239 IPR019787 -
Lal21g1248 243 CDD PHD_AL_plant 188 239 IPR044104 -
Lal21g1248 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 237 IPR013083 -
Lal21g1248 243 PANTHER CPG BINDING PROTEIN 6 243 IPR045104 GO:0006355|GO:0042393
Lal21g1248 243 SMART PHD_3 188 237 IPR001965 -
Lal21g1248 243 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 6 243 - -
Lal21g1248 243 MobiDBLite consensus disorder prediction 142 184 - -
Lal21g1248 243 MobiDBLite consensus disorder prediction 151 173 - -
Lal21g1248 243 Pfam Alfin 13 137 IPR021998 GO:0006355|GO:0042393
Lal21g1248 243 ProSitePatterns Zinc finger PHD-type signature. 189 236 IPR019786 -
Lal21g1248 243 Pfam PHD-finger 189 238 IPR019787 -
Lal21g1248 243 SUPERFAMILY FYVE/PHD zinc finger 177 241 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1248 Lal-Chr21 15573032 15576820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1248 7 243 Alfin-like Transcription Factor Family AT5G05610 73.529 2.49e-117 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lal21g1248 Alfin 5.1e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1248 - - qsu:112011947 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1248 21 15573032 15576820 Lal21g1248 21 15573032 15576820 ECH