Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1246 ATGACGTCATCATCAAACAACCACCCTCTCTCCGATTCCGACACCGATTCCGACGGCGGCGATCCATCCTCCACTTCCATCCGCCGCCACTCCGATCTCTCCGATTCCATTTTCAAATCTTACTTCCAATTCACTGGCCACTCCTCCTCCGCCACCGCCTCCCCCTCCGACCTCTCCAAAATCCAATCTTTCCTCACTTCTTCTTCCTCCGGCGCTCTCTCATGCCTCATTTGTCTCGAACGCATCAAACCCTCTGACCCCACTTGGTCATGCTCTTCCCTCTGCTTCTCCATCTTCCACCTCATCTGTATTCAATCATGGGCACAACAATCTTCCAATCTCTTCGCCTCACGCGCCTCCACGCGCCTCCCGATCTCCCCTGAGACCGCGTCCGAAACCGCCATCTGGAACTGCCCTAAATGTAGGGTAGATTACCCCAAATCCCAGATCCCAAAGGGGTATTACTGTTTCTGTGGGAAACTCAAGGACCCTTATAGTGATGATCCATGGGTTTTGCCTCATTCATGTGGTGATGTGTGTGAGAAGCCATTGATGCACAATTGCGGGCACCATTGCTTGTTGCTTTGCCACCCAGGACCCTGCCCGGCCTGCCCGAAACTCGTAAAAGTTCGATGCTTTTGTGGGTCTAATGATGATGTTAGGAGGTGTGGGTTCAAGGAGTACTCTTGTAATAACCAATGTTCCAAGTTATTGGATTGTGGTGTTCATAAGTGTGTTGAGATTTGCCACATTGGTGATTGTCCACCGTGTCGAAAAATTGGTGTCTATAGATGCCAATGTGGGAAGAAGAATGAGGAGAGGGAGTGTTTTGATAGTGTGTATCGGTGTGAGGAGCCGTGTGACAAGAAGCTTAGGTGTGGGAAGCATGTTTGTGAGAGAGGTTGTCATTATGGGGAGTGTGGTGAGTGCCCTTTACAAGGGAAGAGAACTTGCCCTTGTGAGAAGAGGGTGTTTGAAGGGTTGCCTTGTGATGTACCTGTGCAGGTGTGTGGAGACACTTGTGGTAAGATGCTGAGCTGCGGGTATCATCGGTGCCCTGAAAGGTGCCACCGCGGCCAATGTACTGAGACTTGTAGAGCTGTTGTCAAGAAATGGTGTAGATGTGGCAGCCTCAGGAAAGATGTTCCTTGCTGTCAAGATTTGGTATGTGAAAGGAAGTGTCTGACGATGCGGGATTGTGGGCGGCATGCTTGTAAACGACGTTGCTGCGATGGGGATTGCCCTCCCTGCTCAGAGATATGTGGCAGAAGGCTTCGATGTAAGAACCATAAATGCCCTTCCCCATGCCACAGTGGCGCCTGTGCTCCTTGTCCAATAACGGTGACAATTTCATGTGCATGTGGGGAAACACATTTTGAGGTTCCTTGTGGTACTGAAAAGGATCAAAAGCCACCTAAATGTCCTAAACGATGCCATATTGCTCCTTTATGCCGGCATGCATTAAAATGCAAGCCACACAAATGCCATTATGGAGCATGCCCGCCTTGTCGGCTACCTTGTGATGAAGACTATCCATGTGGCCACGCATGCAAATTAAGGTGTCATGGTGCTAAACCACCTCCTAATCCAGAGTTTACTCTTAAACCGAAGAAAAAGAAGATTATACAAAATGAATGTGTTCCTGGCACACCATGCCCTCCTTGCCCGGAACTTGTGTGGAGATCATGCGTTGGGCAACACATCGGAACAGAGAGAATGGAAAGAGAGCCTAGATGCCAACATCACTGTCCTCGGTCATGTCATCCCGGAGATTGCCCTCCATGCAAGGTGCTCATTAAACGGTCATGTCACTGTGGCTCAATGGTCCATGTTTTTGAGTGCATATACTACAATAGCTTGTCTGCGAAGGATCAAGAGGCTGTTCGTTCATGTCGTGGGCCATGTCATAGAAAGTTACCAAATTGTACACATTTATGCCCAGAGACATGTCATCCTGGTCAATGCCCAAATCCTGAGAAATGCTGTAAAAAGGTCACCGTTCGTTGCAAGTGCCAAACATTGAAAAAAGAGTGGCTGTGTAAAGATGTTCAAGCTGCATATATTCGCGATGATTGTGATTCAAGTGATATACCGAAAAATCAATTCGGAACTGGACTTATTCCTTGCAATTCTGAATGTAAGATCAAAGTGCAGGTTGTCGAGTCAGAACTACAATTGCGTAAATCCAGAGTCACAGAGGTTAAAGAGCCAGACAATGAAAAATCAGTTCCGAAGCGAAGAAAAAGGCGGGAACGGACACTAGAATTGAAGGAAACAACAAAATTACAGAAAATTATTTCCAGAACAAAGCAGCTTCTGCTGTATGTCTTTATTCTGGTCATACTTCTTGTCGCTTCATATTATGGTTACCAGGGAGTTTTACTGCTCAATGATTGGATGAATGAAGTTGACGAGCAACGACAAAGATATTCTCGCACCAAATGA 2445 0.4732 MTSSSNNHPLSDSDTDSDGGDPSSTSIRRHSDLSDSIFKSYFQFTGHSSSATASPSDLSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCSSLCFSIFHLICIQSWAQQSSNLFASRASTRLPISPETASETAIWNCPKCRVDYPKSQIPKGYYCFCGKLKDPYSDDPWVLPHSCGDVCEKPLMHNCGHHCLLLCHPGPCPACPKLVKVRCFCGSNDDVRRCGFKEYSCNNQCSKLLDCGVHKCVEICHIGDCPPCRKIGVYRCQCGKKNEERECFDSVYRCEEPCDKKLRCGKHVCERGCHYGECGECPLQGKRTCPCEKRVFEGLPCDVPVQVCGDTCGKMLSCGYHRCPERCHRGQCTETCRAVVKKWCRCGSLRKDVPCCQDLVCERKCLTMRDCGRHACKRRCCDGDCPPCSEICGRRLRCKNHKCPSPCHSGACAPCPITVTISCACGETHFEVPCGTEKDQKPPKCPKRCHIAPLCRHALKCKPHKCHYGACPPCRLPCDEDYPCGHACKLRCHGAKPPPNPEFTLKPKKKKIIQNECVPGTPCPPCPELVWRSCVGQHIGTERMEREPRCQHHCPRSCHPGDCPPCKVLIKRSCHCGSMVHVFECIYYNSLSAKDQEAVRSCRGPCHRKLPNCTHLCPETCHPGQCPNPEKCCKKVTVRCKCQTLKKEWLCKDVQAAYIRDDCDSSDIPKNQFGTGLIPCNSECKIKVQVVESELQLRKSRVTEVKEPDNEKSVPKRRKRRERTLELKETTKLQKIISRTKQLLLYVFILVILLVASYYGYQGVLLLNDWMNEVDEQRQRYSRTK 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1246 814 CDD NF-X1-zinc-finger 337 386 - -
Lal21g1246 814 CDD NF-X1-zinc-finger 283 326 - -
Lal21g1246 814 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 8 572 IPR034078 GO:0003700
Lal21g1246 814 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 574 811 IPR034078 GO:0003700
Lal21g1246 814 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 8 572 - -
Lal21g1246 814 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 574 811 - -
Lal21g1246 814 CDD NF-X1-zinc-finger 176 224 - -
Lal21g1246 814 Coils Coil 796 814 - -
Lal21g1246 814 CDD NF-X1-zinc-finger 390 438 - -
Lal21g1246 814 SMART znfxneu3 513 557 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 SMART znfxneu3 427 446 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 SMART znfxneu3 240 259 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 SMART znfxneu3 400 419 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 SMART znfxneu3 293 312 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 SMART znfxneu3 490 505 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 SMART znfxneu3 579 597 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 SMART znfxneu3 347 367 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 SMART znfxneu3 188 206 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 SMART znfxneu3 642 664 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 CDD NF-X1-zinc-finger 417 465 - -
Lal21g1246 814 CDD NF-X1-zinc-finger 230 278 - -
Lal21g1246 814 MobiDBLite consensus disorder prediction 731 750 - -
Lal21g1246 814 Pfam NF-X1 type zinc finger 643 660 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 Pfam NF-X1 type zinc finger 188 205 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 Pfam NF-X1 type zinc finger 347 366 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 Pfam NF-X1 type zinc finger 293 311 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 Pfam NF-X1 type zinc finger 494 504 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 Pfam NF-X1 type zinc finger 580 596 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 Pfam NF-X1 type zinc finger 421 445 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 Pfam NF-X1 type zinc finger 240 258 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 Pfam NF-X1 type zinc finger 400 418 IPR000967 GO:0005634|GO:0008270
Lal21g1246 814 SUPERFAMILY RING/U-box 68 147 - -
Lal21g1246 814 MobiDBLite consensus disorder prediction 1 29 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Lal21g1246 zf-NF-X1 0.0026 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1246 K15683 - han:110868965 1169.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1246 21 15555400 15562402 Lal21g1246 21 15555400 15562402 ECH