Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1240 ATGGCTTCTCATGTTACAAATTCTACCATTGGCCGATATGTTTTGGCTATTGTGATTGTCATCATAATTTTCACTCCAAACTTCTCTTATGCCAAGAAATCCAAGATGGTTGGCTTGAAAATGAATGTAATTGATAATTGTTGGAGATCAAATCCTGAATGGAGGAAGCATCGGTCACAACTTGCTACATGCTCAGTGGGTTATGTTGGAAAGATGACAAATAACATTGGTGAGGGTCTTATCCATTATAAAGTTACTGATCCTAGTGATGACCCTATAAACCCTAAATATGGCACCTTGAGGTATGGTGCTTCTGTGATCCAAGGGAAAGTGTGGATTACATTCCAAAGAGACATGATTATTAGGTTACTGAAACCACTTCTCATTAGTAGTTTCACCACCATTGATGGCCGAGGAGTTGATGTTCACATTGCTCATAAAGCATGTTTAATGATCTATAAGGCTACCAACATAATCATTCATGGCCTAAGAATCCATCATTGTAAACCTCAAGCACCTGGGATGGTAATGGGTTCGAATGGAAAGGTTATGCCTTTAGGTCAGGTAGATGGGGATGCAATAAGATTGGTTACTGCTTCCAAAATTTGGATCGATCATAATACACTTTACAATTGTCAAGATGGTCTTCTTGATGTTACACGAGGTTCCACAAATGTGACTGTCTCCAACAACTGGTTCAGATTTCAAGACAAGGTTATGCTTCTGGGTCATGATGATGGATATATTAGAGACAAGAACATGAAGGTTACAGTGATGTACAACCATTTTGGACCTAATTGTAACCAACGCATGCCAAGGATCCGCCATGGATATGCACATGTAGTAAATAATATGTACTTGGGGTGGTTGCAATATGCCATCGGTGGAAGCATGGAACCTAGCCTCAAAAGTGAAGCTAATCTCTTCATAGCGCCAACGTTAGGGAGTAAGGAGGTTACATGGAGAAAAGGGAGTCATGCTAATGAGGATAAATGGGAATTTCATTCAGTGAAAGACATTTTTGAAAATGGAGCATCTTTCAAGGCAACAAAAGGTGAATATGTGCCAAAGCCAAAATATAACAAGGACCAAGCTTTTAAAGTTGCTGATGCTAAATCAGTGAGATCATTGACAAGTTCATCAGGTGCATTACGATGCAGTAAAACCTCTATATGTTAA 1179 0.3919 MASHVTNSTIGRYVLAIVIVIIIFTPNFSYAKKSKMVGLKMNVIDNCWRSNPEWRKHRSQLATCSVGYVGKMTNNIGEGLIHYKVTDPSDDPINPKYGTLRYGASVIQGKVWITFQRDMIIRLLKPLLISSFTTIDGRGVDVHIAHKACLMIYKATNIIIHGLRIHHCKPQAPGMVMGSNGKVMPLGQVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTNVTVSNNWFRFQDKVMLLGHDDGYIRDKNMKVTVMYNHFGPNCNQRMPRIRHGYAHVVNNMYLGWLQYAIGGSMEPSLKSEANLFIAPTLGSKEVTWRKGSHANEDKWEFHSVKDIFENGASFKATKGEYVPKPKYNKDQAFKVADAKSVRSLTSSSGALRCSKTSIC 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1240 392 Pfam Pectate lyase 129 309 IPR002022 -
Lal21g1240 392 SMART amb_all 118 315 IPR002022 -
Lal21g1240 392 PANTHER PECTATE LYASE 8 389 - -
Lal21g1240 392 PANTHER PECTATE LYASE 18-RELATED 8 389 IPR045032 GO:0030570
Lal21g1240 392 SUPERFAMILY Pectin lyase-like 39 384 IPR011050 -
Lal21g1240 392 Gene3D - 41 385 IPR012334 -
Lal21g1240 392 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Lal21g1240 392 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Lal21g1240 392 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Lal21g1240 392 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Lal21g1240 392 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Lal21g1240 392 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Lal21g1240 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1240 Lal-Chr21 15493966 15496226 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1240 72 324 Polysaccharide Lyase AT5G09280 70.751 2.77e-140 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1240 K01728 - gmx:100780437 662.144