Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1237 ATGGCTTCTCATGTTACAAATTCTATCATTGGCCGGCATGTTTTGGCTATTAAATCCAAGATCATTGGCTTGAAAATGAATGTAATTGATAAATGTTGGAGATCAGATCGTGAATGGAGGAAGCATCGGCCACAACTTGCTACGTGTTCTATTGGTTATGTTGGAAAGATGACAAATAACATTGGTGAGGGTCTTATCCATTATAAAGTTACTGATCCTAGTGATGACCCTATAAACCCTAAATATGGCACCTTGAGGTATGGTGCTTCTGTGATCCAAGGAAAAGTATGGATTACATTCCAAAGAGACATGGTTATTAGATTAGTGAGACCACTTCTCATTAGTAGTTTCACTACCATTGATGGTCGAGGAGTCGATATCCACATTGCTCATAATGCATGCTTAATGATCTTTAAGGCTACCAACATAATCATTCATGGCCTAAGAATCCATCATTGCAAACCTCAAGCTCCCGGGATGGTGATGGGTTCTAATGGAAAGGTTATGCCTTTAGGTCAAGTAGATGGGGATGCCATAAGATTGGTTACTGCTTCAAAAATTTGGATTGATCATAATACACTTTATAATTGCCAAGATGGTCTTCTTGATGTTACACGAGGTTCCACTGATATAACAGTTTCCAATAATTGGTTCAGATTTCAAAACAAGGTTATGCTTCCGGGTCATGATGATGGATATATTAGAGATCAGAACATGAAGGTCACAGTGGTGTACAATCATTTTGGACCTAATTGTAACCAACGAATGCCAAGGATTCGCCATGGATATGCACATGTAGTTAATAATATGTACTTGGGATGGTTACAATATGCTATTGGAGGAAGCAAGGAACCTAGTCTCAAAAGTGAAGCTAACCTCTTCATAGCACCAAAGTCAGGGAGTAAGGAGGTTACATGGAGAAAAGGGAATCATGCAAATGGGGATAAATGGGAATTTCATTCGGTGAAAGACATTTTTGAAAATGGAGCATCCTTCAAAGCAACAAAAGGTGGATATGTGAGAAAGCCAAATTATACCAAGGACCAAGCTTTTAACGTTGTTGATGCCAAATCAGTGAGATCATTAATAAGTTCATCAGGTGCATTAAGATGTAGTAAAACCTCTATATGCTGA 1134 0.3845 MASHVTNSIIGRHVLAIKSKIIGLKMNVIDKCWRSDREWRKHRPQLATCSIGYVGKMTNNIGEGLIHYKVTDPSDDPINPKYGTLRYGASVIQGKVWITFQRDMVIRLVRPLLISSFTTIDGRGVDIHIAHNACLMIFKATNIIIHGLRIHHCKPQAPGMVMGSNGKVMPLGQVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTDITVSNNWFRFQNKVMLPGHDDGYIRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVVNNMYLGWLQYAIGGSKEPSLKSEANLFIAPKSGSKEVTWRKGNHANGDKWEFHSVKDIFENGASFKATKGGYVRKPNYTKDQAFNVVDAKSVRSLISSSGALRCSKTSIC 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1237 377 Gene3D - 26 370 IPR012334 -
Lal21g1237 377 SMART amb_all 103 300 IPR002022 -
Lal21g1237 377 Pfam Pectate lyase 115 294 IPR002022 -
Lal21g1237 377 PRINTS Pollen allergen Amb family signature 74 99 IPR018082 -
Lal21g1237 377 PRINTS Pollen allergen Amb family signature 111 127 IPR018082 -
Lal21g1237 377 PRINTS Pollen allergen Amb family signature 175 196 IPR018082 -
Lal21g1237 377 PRINTS Pollen allergen Amb family signature 255 274 IPR018082 -
Lal21g1237 377 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Lal21g1237 377 PRINTS Pollen allergen Amb family signature 317 341 IPR018082 -
Lal21g1237 377 PRINTS Pollen allergen Amb family signature 348 371 IPR018082 -
Lal21g1237 377 PANTHER PECTATE LYASE 13 374 - -
Lal21g1237 377 PANTHER PECTATE LYASE 18-RELATED 13 374 IPR045032 GO:0030570
Lal21g1237 377 SUPERFAMILY Pectin lyase-like 24 364 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1237 Lal-Chr21 15427373 15429732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1237 57 309 Polysaccharide Lyase AT5G09280 69.170 4.59e-138 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1237 K01728 - gmx:100780437 640.958