Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1222 ATGTTAGTTTCGAGTATAGGGTCAGATCCAGTTCATTCAGATTTCAGAGCGAAGCTGGTGAAGCGGCCAAATCTCAAGATGAGTAAAGTGGAAGTGAAAACAGTGGTTCCTGAATCTGTTTTGAAAAAGCAGAAAAGGAATGAAGAATGGGCTTTGGTCAAAAATCAGGAACATGAAGCTTCAAAGAAAAAGAGAGCTGAATCACGCAAATTGATTTTCAACAGAGCCAAACTTTATGCAAAAGAATATGATGAACAGCAAAAGGAGTTGATTAGGTTGAAACGTGAGGCCAAGCTTAAGGGTGGATTTTATGTTGACCCTGAAGCTAAGCTGTTGTTCATAATCAGGATCCGTGGTATCAATGCTATGGACCCAAAGTCAAGGAAGATCTTGCAGCTTCTGCGTTTGAGACGGATCTTCGGTGGTGTCTTTCTCAAAGTTAACAAAGCAACAGTAAATATGCTGCGCAGGGTTGAGCCATACGTTACCTACGGGTACCCGAATTTGAAGAGTGTCAGAGAACTAATCTACAAAAGGGGTTATGGAAAAGTTAATAAACAAAGAATTGCTTTGACCGACAACTCTATTATTGAACAGACTTTGGGTAAGCATGGTATTATTTGCATCGAGGATCTGATCCATGAAATTTTGAGTGTTGGACCTCACTTCAAGGAGGCCAATAATTTTCTGTGGCCTTTCAACCTCAAAGCTCCATTGGGTGGTTTGAAGAAGAAGAGGAATCATTACGTCGAAGGAGGTGACGCCGGAAACAGGGAAGTTTACATAAATGAGCTTATTAGAAGGATGAATTAG 813 0.4071 MLVSSIGSDPVHSDFRAKLVKRPNLKMSKVEVKTVVPESVLKKQKRNEEWALVKNQEHEASKKKRAESRKLIFNRAKLYAKEYDEQQKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRRIFGGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVRELIYKRGYGKVNKQRIALTDNSIIEQTLGKHGIICIEDLIHEILSVGPHFKEANNFLWPFNLKAPLGGLKKKRNHYVEGGDAGNREVYINELIRRMN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1222 270 PANTHER 60S RIBOSOMAL PROTEIN L7 22 270 IPR039699 -
Lal21g1222 270 Pfam Ribosomal protein L30p/L7e 112 162 IPR016082 -
Lal21g1222 270 CDD Ribosomal_L7_archeal_euk 111 270 IPR035808 -
Lal21g1222 270 Pfam Ribosomal L30 N-terminal domain 36 107 IPR012988 -
Lal21g1222 270 TIGRFAM uL30_euk: 60S ribosomal protein uL30 37 270 IPR005998 GO:0000463|GO:0003735|GO:0022625
Lal21g1222 270 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 22 270 - -
Lal21g1222 270 Gene3D - 111 216 IPR036919 -
Lal21g1222 270 Gene3D - 218 270 IPR036919 -
Lal21g1222 270 Coils Coil 76 100 - -
Lal21g1222 270 SUPERFAMILY Ribosomal protein L30p/L7e 111 270 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1222 Lal-Chr21 15278464 15281892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1222 27 270 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 82.787 2.27e-153 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1222 K02937 - gmx:100500011 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1222 21 15278464 15281892 Lal21g1222 21 15278464 15281892 ECH
Lal17g1554 17 16981805 16984391 Lal21g1222 21 15278464 15281892 LSH
Lal21g1222 21 15278464 15281892 Lal4g1557 4 19766056 19770960 LSH