Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1214 ATGGTTTTAGATCTTGTTTATGTTCCTATGATCAAGAAGAATATTGAAGATCATAACATGGAATTACAAGAAGCTGCTTCAGCTGGATTAAAGAGTATGGAACATCTTATTAAACTCCTTTCATATCAATCTCAATCTCAACCACATAGTCCTTGTCCTACAAACAACAACCTTAACCTTAACGACCTTGACTGCTCCAAAATCACGGATTTCACTGTCTCTAAATTCAAAACAGTTATTAATTTATTGAACCGAACCGGTCATGCACGGTTTCGTCGTGCTCCACATCGACCACAATTCTATAAAAAAATCGAACTTGAACCAAAACCTCAAGGCAAGGAAGAAAAAGGTTTGACTTTAGGTTTATCGAAAATAAATGTTATTAAAGAAAAGTCTAATATTATGGATGAGGCTCTTAGCATGTCTACCACCACTACCTCCTTCATGTCCACCATCACCGGCGATGGAAGTGTCTCCGATGGGAAAATTGGACCCTTCCTCGCTCCTCTGGTTCCTGTTGTCTCTGCCGGAAAACCACCTCTCTCTTCTTCTCACCGGAAAAGGTGTCACGATGCCACCCTCTCCGGGAAAGCCTCATCCTCCGGCAATTGTCATTGCTCCAAGAGAAGGAAATCACGTGTGAAACGAACAATTCATGTGCCGGCGATAAGTTCAAAGATCGCCGATATACCGCCAGATGAGTACTCGTGGAGGAAATATGGTCAAAAACCGATTAAGGGTTCACCTTATCCACGTGGATACTACAAGTGCAGCACTGTAAGAGGGTGTCCAGCGAGGAAGCACGTGGAGCGTGCACAAAACGACCCCAAGATGCTGATCGTTACTTATGAAGGAGACCACCACCACGCGCTTCCTTTTTCACCGGCAACTACCGGTGCCGGTGTTATTTTCAAACTCAAGTCATGTTGA 930 0.4366 MVLDLVYVPMIKKNIEDHNMELQEAASAGLKSMEHLIKLLSYQSQSQPHSPCPTNNNLNLNDLDCSKITDFTVSKFKTVINLLNRTGHARFRRAPHRPQFYKKIELEPKPQGKEEKGLTLGLSKINVIKEKSNIMDEALSMSTTTTSFMSTITGDGSVSDGKIGPFLAPLVPVVSAGKPPLSSSHRKRCHDATLSGKASSSGNCHCSKRRKSRVKRTIHVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQNDPKMLIVTYEGDHHHALPFSPATTGAGVIFKLKSC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1214 309 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 18 293 - -
Lal21g1214 309 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal21g1214 309 Pfam Plant zinc cluster domain 186 229 IPR018872 -
Lal21g1214 309 SUPERFAMILY WRKY DNA-binding domain 229 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal21g1214 309 SMART WRKY_cls 231 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal21g1214 309 Gene3D WRKY domain 217 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal21g1214 309 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 293 IPR044810 GO:0003700
Lal21g1214 309 ProSiteProfiles WRKY domain profile. 226 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1214 Lal-Chr21 15121742 15123989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1214 1 289 WRKY Transcription Factor Family AT2G24570 51.250 8.01e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal21g1214 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1214 - - gmx:100127391 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1214 21 15121742 15123989 Lal21g1214 21 15121742 15123989 ECH
Lal21g1214 21 15121742 15123989 Lal4g1555 4 19748765 19752627 LSH
Lal7g1089 7 16872578 16873626 Lal21g1214 21 15121742 15123989 PCT
Lal21g1214 21 15121742 15123989 Lal7g1089 7 16872578 16873626 PCT