Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1196 ATGGAACCTCGCGTTGGGAATAAATTTCGGCTTGGCCGAAAAATCGGTAGCGGTTCGTTTGGAGAGATCTATTTAGGTACTAATGTTCAAACTAATGAAGAGGTTGCAATTAAGCTTGAAAACGTCAAGACAAAGTACCCTCAACTGCTCTATGAGTCCAAATTGTACAGAATTCTCCAGGGGGGAACTGGAATTCCAAATGTGAAATGGTTCGGAGTGGAGGGAGATTACAATGTTCTTGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTCTGTAGTAGAAAGCTCTCACTAAAAACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTTGTTCACTCTAAATCATTTCTTCATCGGGATATCAAACCAGATAATTTCCTCATGGGCCTGGGAAGGAGGGCAAATCAGGTATACTGTATTGATTTTGGTTTGGCGAAGAAATACAAAGATAGTTCAACCCATCAACACATTCCATACAGGGAGAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGTCGAAGGGATGATCTAGAGTCTCTTGGTTATGTCTTGATGTACTTCCTGAGGGGAAGTCTCCCTTGGCAAGGACTTAAAGCAGGAAATAAGAAACAGAAGTATGAGAAAATCAGTGAAAAAAAGGTTTCTACCTCGATAGAGGCCTTGTGTCGAGGCTATCCGACTGAATTTGCATCTTACTTCCATTACTGTCGATCATTAAGGTTTGATGATAGGCCAGATTATGCTTACCTCAAAAGAATATTTCGCGACCTCTTTATTCGTGAAGGATTCCAGTTTGATTATGTGTTTGATTGGACTATCTTGAAGTATCAACAATCGCAGCTAGCTACTCCTCCAACACGTGGCATCGGTCCCAGCGCTGGAACTAGTTCTGGATTGCCTCCGGCTGTGACTAATGCTGATAGACAGACAGGAGGGGAAGAAGGGCGACCTCCTGGACTGATGTCAGCGGAATCCTCGCGTCGAAGAATGCCAGGGCCCGTCGTAAATTCTGCAAGTTTTTCAAAGCAGAAAAGTCCAATCACGAATGATTCTGCTGTTAACAAGGATGCTGCGTTATCAAGTACCAATTTCATGGGCCAGTCAAGTGGATCAAGGCGATTTGCTCTCTCTGGTAGCCGCGAAGCATTTGTTGGCAGTGAATCAGATATTCGTACTCGTACAACCGAGGTTGGCTCCGGAGCAGCATACAAAATTTCAAGTGGGCAAAGAAATTCACCAATTGGATCTTCAGATCCCAAGAGAGCAGTTTCATCTGCGAGAAACGCTTCTGATGTCAAGAACTACGAAACTGCCATCAAGGGCATTGAGGGTTTGCATTTAGAGAATGATGAGAGGACCCATCACTGA 1425 0.4344 MEPRVGNKFRLGRKIGSGSFGEIYLGTNVQTNEEVAIKLENVKTKYPQLLYESKLYRILQGGTGIPNVKWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYCIDFGLAKKYKDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRGIGPSAGTSSGLPPAVTNADRQTGGEEGRPPGLMSAESSRRRMPGPVVNSASFSKQKSPITNDSAVNKDAALSSTNFMGQSSGSRRFALSGSREAFVGSESDIRTRTTEVGSGAAYKISSGQRNSPIGSSDPKRAVSSARNASDVKNYETAIKGIEGLHLENDERTHH 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1196 474 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lal21g1196 474 MobiDBLite consensus disorder prediction 420 451 - -
Lal21g1196 474 PANTHER CASEIN KINASE I-LIKE 1 457 - -
Lal21g1196 474 MobiDBLite consensus disorder prediction 301 370 - -
Lal21g1196 474 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g1196 474 MobiDBLite consensus disorder prediction 355 370 - -
Lal21g1196 474 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g1196 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lal21g1196 474 MobiDBLite consensus disorder prediction 301 323 - -
Lal21g1196 474 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g1196 474 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Lal21g1196 474 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lal21g1196 474 PANTHER CASEIN KINASE-RELATED 1 457 - -
Lal21g1196 474 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1196 Lal-Chr21 14788243 14796434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1196 7 219 EF-hand Containing Proteins AT2G17890 26.244 3.67e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lal21g1196 Pkinase 2.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1196 K02218 - pvy:116113671 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1196 21 14788243 14796434 Lal21g1196 21 14788243 14796434 ECH