Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1195 ATGGCAGCAGCAGCACCTGAGGGGTCACAGTTTGATGCTAAGCAATTTGATTCCAAGATGAATGAGTTGCTTACATCTGATGGACAGGACTTCTTCACATCTTATGATGAGGTTCATGATAGTTTTGATGCTATGGGCTTGCAAGAAAATCTCCTGAGAGGCATTTATGCATATGGTTTCGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAAGGGACTTGATGTTATACAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACATTCTGCTCTGGGATTCTGCAGCAACTTGACTACAGTGTGACTGAATGCCAGGCCTTGGTTTTGGCACCAACTCGTGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGGGCACTTGGAGATTATTTAGGTGTGAAGGTACATGCTTGTGTGGGAGGTACCAGTGTTCGTGAAGACCAACGTATTCTGTCAAGCGGTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGATATGCTGCGCAGACAGTCACTTAGGCCAGATTATATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGGGGTTTTAAAGATCAGATCTATGATATATTCCAGCTGCTTCCATCCAAGATTCAAGTGGGAGTTTTCTCTGCTACCATGCCTCCAGAGGCTCTCGAGATCACAAGGAAATTTATGAATAAACCTGTGAGGATCCTTGTGAAGCGTGATGAGCTTACCTTGGAAGGTATTAAGCAGTTTCATGTCAATGTTGAGAAAGAGGAGTGGAAGCTGGACACACTCTGTGATCTTTATGAGACATTGGCGATCACTCAGAGTGTCATTTTTGTGAACACCAGAAGGAAGGTTGATTGGCTTACTGACAAGATGCGAAGCCGAGACCACACAGTCTCGGCAACCCATGGAGACATGGACCAGAATACCCGTGACATTATCATGCGTGAATTCCGTTCCGGGTCTTCCCGTGTTTTAATAACTACTGATCTTTTGGCTCGTGGTATTGATGTCCAGCAAGTGTCTCTAGTTATAAATTATGACCTTCCAACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGAAGGTTCGGTAGGAAGGGTGTTGCCATCAACTTTGTCACAAAGGATGACGATAGAATGCTTTTTGACATTCAGAAGTTCTACAATGGAAGTTGGTTTCCGAGTATTAAAATGAAAGTAGTGAATTTTGATTTAATGATGGATGATGCTTTATAA 1266 0.44 MAAAAPEGSQFDAKQFDSKMNELLTSDGQDFFTSYDEVHDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSVTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDDRMLFDIQKFYNGSWFPSIKMKVVNFDLMMDDAL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1195 421 SMART ultradead3 59 256 IPR014001 -
Lal21g1195 421 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 400 - -
Lal21g1195 421 PANTHER BNAA02G16100D PROTEIN 6 400 - -
Lal21g1195 421 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Lal21g1195 421 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Lal21g1195 421 CDD SF2_C_DEAD 253 383 - -
Lal21g1195 421 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Lal21g1195 421 Gene3D - 249 403 IPR027417 -
Lal21g1195 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Lal21g1195 421 CDD DEADc_EIF4A 44 242 - -
Lal21g1195 421 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 414 IPR001650 -
Lal21g1195 421 SMART helicmild6 293 374 IPR001650 -
Lal21g1195 421 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Lal21g1195 421 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Lal21g1195 421 Gene3D - 30 248 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1195 Lal-Chr21 14782342 14786069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1195 1 391 Eukaryotic Initiation Factors Gene Family AT3G13920 92.347 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1195 K03257 - gmx:100788218 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1195 21 14782342 14786069 Lal21g1195 21 14782342 14786069 ECH
Lal17g1518 17 16550173 16553632 Lal21g1195 21 14782342 14786069 LSH
Lal21g1195 21 14782342 14786069 Lal4g1539 4 19509448 19512833 LSH