Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1192 ATGGGTAGTGTAATGGACGGTGGTGCTCACTACAACCCTCGCTCGGTGGAAGCCGTTTTCCGAGACTTCAACGGCCGCAGGTCCGCCATTATCAAAGCCCTCACTACTGATGTGGTGGAATTTTACCAGCAGTGTGATCCCGAAAAGGAGAATCTTTGTCTGTATGGGTTTCCTACTGAAAAATGGGAAGTTAATTTACCCGCTGAAGAAGTTCCTCCTGAACTTCCTGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAACAAAAGGACTGGCTTTCTTTGGTTGCTGTTCACAGTGATGCATGGCTGCTTTCAGTGGCTTTCTACTTTGGGGCAAGATTTGGTTTTGGTAGTGCTGACCGGAAACGCCTGTTCACTATGATTAATGATCTGCCAACAATATATGAGGTTCTGACCGGAAATGCAAAGAAACAGTCAAAGGAAAAGTCATCAGTTTCAAATCACACCAGCAATAAATCAAAGTCTGGTTCTAAAGGGCGTGGATCTGAGTCAAGGAAGTATTCGAAGCAAGCAAAGGATGAGGATGAGGACGAGGAGGAGGAGGAGGAGACATTGGTAGAAGATGAAGACGAGGGGCATTGTGGTGCATGTGGGGAGATTTATGCATCTGAAACTGTTGAGTTCTGGATTTGTTGTGACATATGTGAGAAATGGTTCCATGGTAAATGTGTGAAGATCACTCCTGCCCGGGCTGATCACATCAAGCACTATAAGTGCCCTTTATGCAGCAGCAATAAGAGAGCGCGACCTTGA 783 0.4636 MGSVMDGGAHYNPRSVEAVFRDFNGRRSAIIKALTTDVVEFYQQCDPEKENLCLYGFPTEKWEVNLPAEEVPPELPEPALGINFARDGMQQKDWLSLVAVHSDAWLLSVAFYFGARFGFGSADRKRLFTMINDLPTIYEVLTGNAKKQSKEKSSVSNHTSNKSKSGSKGRGSESRKYSKQAKDEDEDEEEEEETLVEDEDEGHCGACGEIYASETVEFWICCDICEKWFHGKCVKITPARADHIKHYKCPLCSSNKRARP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1192 260 SUPERFAMILY FYVE/PHD zinc finger 196 255 IPR011011 -
Lal21g1192 260 SMART PHD_3 203 253 IPR001965 -
Lal21g1192 260 MobiDBLite consensus disorder prediction 148 167 - -
Lal21g1192 260 Pfam Alfin 16 142 IPR021998 GO:0006355|GO:0042393
Lal21g1192 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 254 IPR013083 -
Lal21g1192 260 CDD PHD_AL_plant 204 255 IPR044104 -
Lal21g1192 260 ProSiteProfiles Zinc finger PHD-type profile. 201 255 IPR019787 -
Lal21g1192 260 MobiDBLite consensus disorder prediction 184 198 - -
Lal21g1192 260 MobiDBLite consensus disorder prediction 168 183 - -
Lal21g1192 260 Pfam PHD-finger 204 254 IPR019787 -
Lal21g1192 260 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 7 260 - -
Lal21g1192 260 ProSitePatterns Zinc finger PHD-type signature. 204 252 IPR019786 -
Lal21g1192 260 Coils Coil 181 201 - -
Lal21g1192 260 PANTHER CPG BINDING PROTEIN 7 260 IPR045104 GO:0006355|GO:0042393
Lal21g1192 260 MobiDBLite consensus disorder prediction 148 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1192 Lal-Chr21 14717541 14723804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1192 5 259 Alfin-like Transcription Factor Family AT3G42790 69.922 1.34e-111 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lal21g1192 Alfin 1.6e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1192 - - cpap:110817645 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1192 21 14717541 14723804 Lal21g1192 21 14717541 14723804 ECH
Lal17g1508 17 16461772 16466748 Lal21g1192 21 14717541 14723804 LSH
Lal21g1192 21 14717541 14723804 Lal4g1532 4 19424366 19428781 LSH