Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1190 ATGGCAACAACCCAAATGAGCAAGAAGCGAAAGTTCGTAGCTGATGGAGTTTTCTTCGCTGAATTGAATGAAGTTCTTACTAGAGAACTTGCTGAAGATGGATATTCTGGTGTTGAGGTTAGGGTTACACCTATGCGCACTGAGATTATTATCAGAGCCACTCGTACCCAAGCTGTTCTTGGTGAGAAAGGAAGGAGAATTAGGGAGCTTACCTCAGTGGTGCAGAAGAGGTTCAAATTCCAAGAGAGCACCGTGGAGCTTTATGCTGAGAAGGTGAACAACAGGGGTCTGTGTGCTATCGCTCAGGCTGAGTCTCTTCGCTACAAGCTCCTTGGAGGTCTTGCCGTGCGGAGGGCCTGCTATGGTGTTTTGAGATTTGTCATGGAAAGTGGTGCGAAGGGATGCGAGGTCATTGTTAGTGGAAAATTGAGGGCCCAGAGAGCCAAATCCATGAAATTCAAGGACGGGTACATGATTTCTTCCGGGCAACCCGTCAAGGATTACATCGACTCCGCAGTGAGACATGTGCTCCTAAGACAGGGTGTTCTTGGTATCAAGGTTAAGATCATGCTCGACTGGGATCCTAAAGGAAAGCAGGGACCGAAAACACCCCTACCGGATATTGTTACAATCCACACTCCAAAGGAGGAGGAAGAGTACATTCAGCCTCCCCCTGCTACTGTTGTTATTACAAATGAAATTGAAGTTCCTCTGGCTTGA 720 0.475 MATTQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFQESTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIQPPPATVVITNEIEVPLA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1190 239 TIGRFAM uS3_euk_arch: ribosomal protein uS3 9 211 IPR005703 GO:0003735|GO:0006412|GO:0015935
Lal21g1190 239 Gene3D - 94 220 IPR036419 -
Lal21g1190 239 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 4 235 - -
Lal21g1190 239 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 11 100 IPR009019 GO:0003723
Lal21g1190 239 ProSiteProfiles Type-2 KH domain profile. 22 93 IPR004044 GO:0003723
Lal21g1190 239 ProSitePatterns Ribosomal protein S3 signature. 148 184 IPR018280 -
Lal21g1190 239 Gene3D - 1 92 IPR015946 -
Lal21g1190 239 Pfam KH domain 21 94 IPR004044 GO:0003723
Lal21g1190 239 SUPERFAMILY Ribosomal protein S3 C-terminal domain 94 192 IPR036419 -
Lal21g1190 239 CDD 40S_S3_KH 16 96 - -
Lal21g1190 239 Pfam Ribosomal protein S3, C-terminal domain 107 189 IPR001351 GO:0003735|GO:0006412
Lal21g1190 239 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 4 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1190 Lal-Chr21 14702037 14705365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1190 4 239 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 86.017 8.60e-149 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1190 K02985 - gmx:100499737 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1190 21 14702037 14705365 Lal21g1190 21 14702037 14705365 ECH