Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1182 ATGAACATGTCTACCTCATCAGAATTTTCTGACCAGAAACCATTGAAGGTGTCAGAGAAAACAAGTTTCTCTCATACTTGTAATCTATTGAGTCAATACATTAAGGAAAAGGGTAGTTTTGGAGATCTTAACCTTGGGATTACATGCAATACAGAACCACTTGAGTTACCTGTTACATCTTGTCAATCTGCAACAACCATGAACTTGTTTCCTACCAAAGAAAATAACATGGCACCAAAGAATCTGACAGCTATGGATTTGATCAATTCTAGTGCAGTTAAGTCTGTGATCAAGAGGCCTAAAGCTGCAGAATTGACAATTTTTTATGGTGGACAAGTTATTGTATTTGATGATTTTCCGGCCGATAAAGCCGATGTGCTCATGTCGTTTGCCCGAAACGGAATCTCCCAAAGCCACACTTACACTCTTAGCCAGCCTTCATTTGCTTATAATTTGGTCAGAACTTCTGCTGATTCAAGTGCTGCAGTTATTCCTCAACCATCATTAAGACCTGTTGTTTGTGATCTACCAATTGCTAGGAAAGCTTCGCTACATCGGTTCTTGGAGAAGAGAAAGGATAGAATTGCTGCAAAAGCACCATATCAAATAACAAGTTCCATGGCAATTTCTAATAAGCCACTTGAATCTATGTCATGGCTTGGTTTGAGTGCTAAATCACCTCAAATATAA 690 0.387 MNMSTSSEFSDQKPLKVSEKTSFSHTCNLLSQYIKEKGSFGDLNLGITCNTEPLELPVTSCQSATTMNLFPTKENNMAPKNLTAMDLINSSAVKSVIKRPKAAELTIFYGGQVIVFDDFPADKADVLMSFARNGISQSHTYTLSQPSFAYNLVRTSADSSAAVIPQPSLRPVVCDLPIARKASLHRFLEKRKDRIAAKAPYQITSSMAISNKPLESMSWLGLSAKSPQI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1182 229 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 18 223 IPR040390 -
Lal21g1182 229 Pfam tify domain 100 131 IPR010399 -
Lal21g1182 229 Pfam Jas motif 177 202 IPR018467 -
Lal21g1182 229 ProSiteProfiles Tify domain profile. 98 133 IPR010399 -
Lal21g1182 229 SMART tify_2 98 133 IPR010399 -
Lal21g1182 229 PANTHER PROTEIN TIFY 10A 18 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1182 Lal-Chr21 14630503 14633553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1182 6 225 Tify Gene Family AT1G19180 38.189 3.73e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lal21g1182 tify 3.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1182 K13464 - gmx:100801449 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1182 21 14630503 14633553 Lal21g1182 21 14630503 14633553 ECH
Lal17g1483 17 16279601 16282714 Lal21g1182 21 14630503 14633553 LSH
Lal21g1182 21 14630503 14633553 Lal4g1510 4 19273028 19276359 LSH
Lal14g1638 14 16747697 16752164 Lal21g1182 21 14630503 14633553 PCT
Lal7g1044 7 16583394 16585491 Lal21g1182 21 14630503 14633553 PCT
Lal19g1186 19 15294520 15297914 Lal21g1182 21 14630503 14633553 PCT
Lal21g1182 21 14630503 14633553 Lal14g1638 14 16747697 16752164 PCT
Lal21g1182 21 14630503 14633553 Lal7g1044 7 16583394 16585491 PCT
Lal21g1182 21 14630503 14633553 Lal19g1186 19 15294520 15297914 PCT