Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1179 ATGGCCACTACCCAAATGACAGCATCATCAATTTCTGCGAGGAACATGGCATTATTTGAAGGGCTTCGACCTTCAGTAGTTCAGTTTCCTTGTGTAGGACATGTCAGAATTGGCAATTTAACACAAAGAACCTTAAAGGGTATTGTTGTCAAAGCCTCCACTGTTGTTGCTCCTAAGTATACTACTATTAAGCCTCTGGGTGACAGAGTTCTGGTAAAAATTAAGGAAGCTGAAGAGAAGACGGAGGGTGGGATTTTGCTTCCGACAACGGCTCAAACTAAGCCTCAAGGTGGTGAAGTTGTTGCTATTGGAGAAGGAAAGACATTCGGGAAGAACAAATTGGACATTAGTGTCGAGTCGGGAGAACAAGTTGTGTATTCGAAGTATGCAGGTACTGAGGTGGAGTTCAATGGTACGAAGCATCTTATATTGAAGGACGATGACATCGTTGGTATCCTTAACACCGATGATGTAAAGGATCTTAAACCCTTGAATGATAGAGTCTTAATAAGGGTTTCGGAAGCTGAGGAAATGACCGCAGGCGGTTTGTTGCTTACTGAGGCAACCAAGGAGAAACCTTCTGTTGGAACAGTAGTAGCAGTTGGTCCAGGGTCTTTGGATGAGGAAGGTAACAGAAAACCGTTGTCTGTTATTCCTGGGAACACTGTACTGTACTCTAAATATGTTGGGAATAATTTCAAGGGCAAAGATAGTTCTGATTACATTGCTTTGAGGGCCTCAGATGTTATAGTCATCCTCTCATAG 765 0.4288 MATTQMTASSISARNMALFEGLRPSVVQFPCVGHVRIGNLTQRTLKGIVVKASTVVAPKYTTIKPLGDRVLVKIKEAEEKTEGGILLPTTAQTKPQGGEVVAIGEGKTFGKNKLDISVESGEQVVYSKYAGTEVEFNGTKHLILKDDDIVGILNTDDVKDLKPLNDRVLIRVSEAEEMTAGGLLLTEATKEKPSVGTVVAVGPGSLDEEGNRKPLSVIPGNTVLYSKYVGNNFKGKDSSDYIALRASDVIVILS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1179 254 PIRSF Cpn21 1 254 IPR017416 GO:0006457|GO:0046914|GO:1901671
Lal21g1179 254 ProSitePatterns Chaperonins cpn10 signature. 161 185 IPR018369 GO:0005524|GO:0006457
Lal21g1179 254 Gene3D GroES chaperonin 156 254 IPR037124 GO:0006457
Lal21g1179 254 Gene3D GroES chaperonin 55 155 IPR037124 GO:0006457
Lal21g1179 254 SUPERFAMILY GroES-like 61 154 IPR011032 -
Lal21g1179 254 CDD cpn10 161 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal21g1179 254 ProSitePatterns Chaperonins cpn10 signature. 63 87 IPR018369 GO:0005524|GO:0006457
Lal21g1179 254 PANTHER GROES CHAPERONIN 1 254 - -
Lal21g1179 254 Hamap Co-chaperonin GroES [groES]. 160 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal21g1179 254 SUPERFAMILY GroES-like 160 253 IPR011032 -
Lal21g1179 254 Pfam Chaperonin 10 Kd subunit 161 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal21g1179 254 Pfam Chaperonin 10 Kd subunit 63 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal21g1179 254 PRINTS 10kDa chaperonin signature 63 78 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal21g1179 254 PRINTS 10kDa chaperonin signature 85 106 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal21g1179 254 PRINTS 10kDa chaperonin signature 119 131 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal21g1179 254 PRINTS 10kDa chaperonin signature 140 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal21g1179 254 SMART Cpn10_2 62 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal21g1179 254 SMART Cpn10_2 160 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal21g1179 254 Hamap Co-chaperonin GroES [groES]. 62 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal21g1179 254 CDD cpn10 62 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal21g1179 254 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1179 Lal-Chr21 14532484 14536024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1179 1 254 Calmodulin-binding Proteins AT5G20720 71.875 4.12e-130 366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1179 21 14532484 14536024 Lal21g1179 21 14532484 14536024 ECH
Lal17g1481 17 16247582 16250450 Lal21g1179 21 14532484 14536024 LSH
Lal21g1179 21 14532484 14536024 Lal4g1506 4 19222039 19229095 LSH
Lal7g1043 7 16571606 16581855 Lal21g1179 21 14532484 14536024 PCT
Lal19g1183 19 15269394 15272104 Lal21g1179 21 14532484 14536024 PCT
Lal21g1179 21 14532484 14536024 Lal7g1043 7 16571606 16581855 PCT
Lal21g1179 21 14532484 14536024 Lal19g1183 19 15269394 15272104 PCT