Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1174 ATGAAGAACCTTCCATTTCCTCATTCAATAACTGGAGTGATAGATATTGAGACCTTTCATTTCACACCATTCTCTGAGAAAGGTAAACACAAATCCACCGCCATCTCCGTCGAACATTACTCTCTCAACCCTCACTTGTACCGGTCCATTCTCATTGATCTCTCCGACTCCGATGATGATCAAAACGACGACGTCACAATCCTCACTTCCAAGCCCCCAAACACTCCTTTTGGGAAACCTAAAAGAATCTTCGAAATTGGAGAATCTTCTAATTCTAATAATACTATCACTCCTTTCTTATGTCATATTTGTACTGAAACAAAAACCTTAAACGACGCGTTTCGTGTCCATAATTGCTCTCACTCTTATTGCACTGATTGTGTTGTAATGTACGTTGAATCCAAGCTGCAAGAGAACGTTGTAAAAATTCGGTGCCCTGAACCAGAATGTGAATTAGGGCTATTGGAACTTTATGGTTGTCGTGGAATTCTTCCTAAGGAAGTGTTTGATCGTTGGGGTGATGCTTTGTGTGAGTCTATGATTCTTGAAAATGAGAAATTCTATTGTCCTTTTAAGGATTGTTCTGCGCTTATGGTTAACGATGGTGGAGAATTGGTGAAGGAATCTGAGTGCCGTAATTGTAGGAGAAGGTTCTGTGCACAGTGTAGGGTTTCATGGCATGATGGAATTGACTGTGATGAGTTTCAGAAACTGAATAAGGATGAGAGAGAAAAGGAAGATATTCTGTTGATGCAGCTTGCGAATAATAACAAGTGGAGAAGATGTTCAAAGTGCAGGATTTTTGTTGAGAAAGTTGATGGATGCATGTACATTAAATGCAGGTGTGGACATGCTTTCTGTTACAACTGTGGAGCTATTCCTACTGAATATATGAAAACTTGA 903 0.3976 MKNLPFPHSITGVIDIETFHFTPFSEKGKHKSTAISVEHYSLNPHLYRSILIDLSDSDDDQNDDVTILTSKPPNTPFGKPKRIFEIGESSNSNNTITPFLCHICTETKTLNDAFRVHNCSHSYCTDCVVMYVESKLQENVVKIRCPEPECELGLLELYGCRGILPKEVFDRWGDALCESMILENEKFYCPFKDCSALMVNDGGELVKESECRNCRRRFCAQCRVSWHDGIDCDEFQKLNKDEREKEDILLMQLANNNKWRRCSKCRIFVEKVDGCMYIKCRCGHAFCYNCGAIPTEYMKT 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1174 300 Pfam IBR domain, a half RING-finger domain 252 292 IPR002867 -
Lal21g1174 300 Pfam IBR domain, a half RING-finger domain 178 232 IPR002867 -
Lal21g1174 300 SMART ibrneu5 170 232 IPR002867 -
Lal21g1174 300 SMART ibrneu5 242 300 IPR002867 -
Lal21g1174 300 ProSitePatterns Zinc finger RING-type signature. 119 128 IPR017907 -
Lal21g1174 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 181 IPR013083 -
Lal21g1174 300 ProSiteProfiles TRIAD supradomain profile. 97 300 IPR044066 -
Lal21g1174 300 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 51 294 IPR031127 GO:0004842|GO:0016567
Lal21g1174 300 ProSiteProfiles Zinc finger RING-type profile. 101 146 IPR001841 -
Lal21g1174 300 Gene3D - 229 298 - -
Lal21g1174 300 SUPERFAMILY RING/U-box 243 294 - -
Lal21g1174 300 SUPERFAMILY RING/U-box 98 179 - -
Lal21g1174 300 SUPERFAMILY RING/U-box 175 237 - -
Lal21g1174 300 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 51 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1174 Lal-Chr21 14450735 14452974 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1174 101 292 C3H Transcription Factor Family AT2G19610 29.703 7.83e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1174 K11975 - twl:120005643 327.405