Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1170 ATGACAGAGAAAATGAAAAACCTTGCTTTTCCTCCTTCAAAAGCTGAAGTTATAGATGTTGAAACCTTTCGTTTCACACCATTCTCTGAGAAAGGTAAACACAAATCCACCGCTATCTCCGTTGAACATTACTCTCTTAACCCTCACTTGTACCGTACCATTCTCATTGATCTCTCTGACTCCGATGATGATCAAAACGACGACGTCGCAATCCTCACTTCCAACCCCCCAAATACTCCTTTTGGGAAACGTAAAAGAGTCTTCGAAATTGGAGAATCTTCTAATACCAAAAATAATACTATCACTCCTTTCTTATGCCATATCTGCACTGAAACAAAAACCCTAAACGACGCGTTTCGTATCCAGAATTGCTCTCACTCTTATTGCACTGATTGTGTTGTAATGTACGTTGAATCCAAGCTGGAAGATAACGTTGTTAAAATTCGGTGCCCTGAACCAGAATGTGAATTAGGGCTATTGGAACTTTATGGTTGTCGTGGAATTCTTCCGAAGGAAATGTTTGATCGTTGGGGTGATGCTTTGTGTGAGGCTATGATTCTTGAAAATGAGAAATTCTATTGTCCTTTTAAGGATTGCTCTGCGCTTTTGGTTAATGATGGTGGAGAATTGGTGAAGGAATCTGAGTGCCCTAATTGTAGGAGATTGTTCTGTGCGCAGTGTAGGGTTTCGTGGCATGATGAGATTGAGTGTGATGAGTTTCAGAAACTGAATAAGGATGAGAGAGAAAAGGAAGATATCATGCTGATGCAGCTTGCGAATAATAACAAGTGGAGTAGATGTCCAAAGTGCAAGTTTTATGTTGAGAGATCTGAGGGATGCTTGTACATAAAATGCAGTTATAGAAGTCGTCGAATCCGTACCATGGTCATAGTTGCATGA 900 0.4033 MTEKMKNLAFPPSKAEVIDVETFRFTPFSEKGKHKSTAISVEHYSLNPHLYRTILIDLSDSDDDQNDDVAILTSNPPNTPFGKRKRVFEIGESSNTKNNTITPFLCHICTETKTLNDAFRIQNCSHSYCTDCVVMYVESKLEDNVVKIRCPEPECELGLLELYGCRGILPKEMFDRWGDALCEAMILENEKFYCPFKDCSALLVNDGGELVKESECPNCRRLFCAQCRVSWHDEIECDEFQKLNKDEREKEDIMLMQLANNNKWSRCPKCKFYVERSEGCLYIKCSYRSRRIRTMVIVA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1170 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 186 IPR013083 -
Lal21g1170 299 SMART ibrneu5 175 237 IPR002867 -
Lal21g1170 299 ProSiteProfiles Zinc finger RING-type profile. 106 151 IPR001841 -
Lal21g1170 299 ProSiteProfiles TRIAD supradomain profile. 102 299 IPR044066 -
Lal21g1170 299 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 97 286 - -
Lal21g1170 299 SUPERFAMILY RING/U-box 103 184 - -
Lal21g1170 299 ProSitePatterns Zinc finger RING-type signature. 124 133 IPR017907 -
Lal21g1170 299 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 97 286 IPR031127 GO:0004842|GO:0016567
Lal21g1170 299 Gene3D - 235 289 - -
Lal21g1170 299 SUPERFAMILY RING/U-box 179 242 - -
Lal21g1170 299 SUPERFAMILY RING/U-box 248 286 - -
Lal21g1170 299 Pfam IBR domain, a half RING-finger domain 186 237 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1170 Lal-Chr21 14379294 14380337 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1170 106 286 C3H Transcription Factor Family AT2G31770 27.273 7.52e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1170 K11975 - twl:120005643 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1170 21 14379294 14380337 Lal21g1170 21 14379294 14380337 ECH