Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1168 AGAATGAAAAACCTTTCATCTTCTCATTCAACACCTGAAGCAGTAATAGATGTTGAAACCTTTCGTTTCACACCATTCTCTGAGAAAGGTAAACACAAATCCACCGCCATCTCCGTTGAACATTACTCTCTTAACCCTCACTTGTACCGTCCCATTCTCATTGATCTCTCCGACTCCGATGATGATCAGAACGACGACGTCGCAATCCTCACTTTCATACCCCCAAACACTCCTTTTGGGAAACGTAAAAGAATCTTCGAAATCGGAGAATCTTCTAATTCCAATAATAATAATAATACTGTCACTCCTTTCTTATGTCTTATTTGTACTGAAACAAAAACCCTAAACGACGCGTTTCGTATCCATTATTGCTCTCACTCTTATTGCACCGACTGTGTAGTAATGTACGTTGAATCCAAGCTGCAAGAGAACGTTGTTAAAATTCGGTGCCCTGAACCAGAATGTGAATTAGGGCTATTGGAGCTTTATGGTTGTCGTGGAATTCTCCCGAAGGAAATGTTTGATCGTTGGGGTGATGCTTTGTGTGAAGCTATTATTCTTGAAAATGAGAAATTCTATTGTCCTTTTAAGGATTGCTCTGCGCTTATGGTTAACGATGGTGGAGAATTGGTGAAGGAATCTGAGTGCCCTAATTGTAGGAGATTGTTCTGTGCGCAGTGTAGGGTTTCGTGGCATGATGAGATTGAGTGTGATGAGTTTCAGAAACTGAATAAGGATGAGAGAGAAAAGGAAGATATCATGCTGATGCAGCTTGCGAATAATAACAAGTGGAGTAGATGTCCAAACTGCAAGTTTTATGTTGAGAGAATTGATGGATGCATGTACATGAAATGCAGGTGTGGACATGCCTTTTGTTACAACTGTGGAGTTCTTTCCAAAGATAATTCTCATTATTGCTACAACTGTAGACGCTGA 936 0.4028 RMKNLSSSHSTPEAVIDVETFRFTPFSEKGKHKSTAISVEHYSLNPHLYRPILIDLSDSDDDQNDDVAILTFIPPNTPFGKRKRIFEIGESSNSNNNNNTVTPFLCLICTETKTLNDAFRIHYCSHSYCTDCVVMYVESKLQENVVKIRCPEPECELGLLELYGCRGILPKEMFDRWGDALCEAIILENEKFYCPFKDCSALMVNDGGELVKESECPNCRRLFCAQCRVSWHDEIECDEFQKLNKDEREKEDIMLMQLANNNKWSRCPNCKFYVERIDGCMYMKCRCGHAFCYNCGVLSKDNSHYCYNCRR 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1168 311 SUPERFAMILY RING/U-box 180 242 - -
Lal21g1168 311 SMART ibrneu5 247 309 IPR002867 -
Lal21g1168 311 SMART ibrneu5 175 237 IPR002867 -
Lal21g1168 311 Gene3D - 235 311 - -
Lal21g1168 311 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 310 IPR031127 GO:0004842|GO:0016567
Lal21g1168 311 SUPERFAMILY RING/U-box 103 184 - -
Lal21g1168 311 ProSiteProfiles TRIAD supradomain profile. 102 311 IPR044066 -
Lal21g1168 311 ProSitePatterns Zinc finger RING-type signature. 124 133 IPR017907 -
Lal21g1168 311 ProSiteProfiles Zinc finger RING-type profile. 106 151 IPR001841 -
Lal21g1168 311 SMART ring_2 267 309 IPR001841 -
Lal21g1168 311 SMART ring_2 106 155 IPR001841 -
Lal21g1168 311 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 54 310 - -
Lal21g1168 311 Pfam IBR domain, a half RING-finger domain 185 237 IPR002867 -
Lal21g1168 311 SUPERFAMILY RING/U-box 248 310 - -
Lal21g1168 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 186 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1168 Lal-Chr21 14373344 14375431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1168 106 297 C3H Transcription Factor Family AT2G19610 28.713 1.42e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1168 K11975 - twl:120005643 350.132