Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1167 ATGCAACAGAAGCAACAACGTGGGAAGGCTTTTAATGGTTCTTCGCGGCATTGTAGTCTACTTGCTATTCTAAGTGATAATTCACATGACAATAAGCTAAAGCAGAAGCAGAATGCTACTTCTGAGGATCAATCCCTTTACCCCTTTCCAGACCTTTCTTCCTCCGGCCATCTTCAGGTTAAAGTTTTGACCAAACCTACTGCTGATGAACTCGGCCGAGTTCTTGAACAACTGCAGCCGGATTTTGTTTACCTGCAAGGTAGTGGAGAAATTGGATCTCTTGTATGGGACGATTTTGACCTGTCTGTTCCAGAAGCCTTATGTGGATTATTTTCTTCCAAATTACCTAATACCGTTTATTTGGAAACTCCTAAAGGAGAAAAGTTGGCAGAGGCACTTCATTTTAAGGGAGTTCCTTATACAATCTATTGGAAAAATGATTTTTCAAAATATGCAGCTTCTCATTTTCATCAAGCTTTTTTCTCAGTAGCACAGAGTACATCAAGCCATACATGGGATGCTTTCCAACTCGCTCTTGCATCTTTTAGACTATACTGTGTACAAAACAACGTCTTACCTTCTAACGGCCAGAAGAGTGATGCCGAGTTTGGGCCACAAATTCTCGGGGACCCTCCCAACATTGATATTACTCCATGTGAAGCAAACATGAAGGAGGAGGAGGATGAAAGTTCACCCGAGACTATTTCTTCTGTGAAGATATATGATGATGATGTGAACATGAGTGTTCTTGTTTGTGGAGTTCCCTGCACATTGATACGTGGATGTAAACTTCACAACAGGACAAGTGCTCCACCACCTCCTCTTCAGGTAGGAACATTTTCACGTGGTGTCGTGACCATGCGTTGCGATATATCTACAAGTAGTTCTGCGCATATATCACTTTTGGTATCCGGCAGTGCAGATACTTGTTTTAATGATCAGGCAAGGCTTTTAGAGAACCACATTAAAGTAGAACTGATAGAGAAGATTCAGCTTGCCCAGGCATTTCCTAATGATCAAAAAAGCAAGTTATCTTCTTCCGAGCCTCGAAGATCAGCCTCAGTAGCTTGTGGATCCAGTGTGTTTGAAGTCTGTATACGAGTTCCTACATGGGCTTCACAGGTTCTGCGACAGCTTGCACCAAATGTGTCATACCGCAGCCTAGTTATGTTGGGAGTTGCTAGTATTCAAGGACTACCTGTTGCATCTTTTAATCAAGATGATGCAGATCGTCTCCTTTTCTTTTCTACTAGGCAGGAGAAAGAAAACCGTCCAAACGATCCCGTTGTCTCTGGGTATCCTAGTTGGCTGAAGCCTCCAGTACCTAGTCGAAAAAGATCTGAACCATGCTCTAGAACAAAATCTATGAATGCTAGTGGGATGGAAGTTGAGGATATCGGTAGTTATAGACAGAAATTAAATTTGGCTGCAATGAGGCCAATCCCTCAATCTAATCGTCACAAGATTCTCCCATTTTCTGGATTTTCTGAGGGTGAAAGATATGATGGAGATATCGGAAAATCAAATCAGTTACTTGCTCCTGTTAAGCATAATGTTGTTGGCTCTAATGCAGTTACACATAGGAAGTCCGTGTCAAACTCATTTCAAGCCCATCAGATTATTTCTCTGAATCCGTTACCTATGAAAAAACATGGCTGTGACAGAGCTCCCATACGAGCTTGCTCAGAGGAGGAGTTCCTGAGGGATGTAATGCAGTTTCTGATGCTTCGGGGACATACTCGTCTCATTCCACAAGGCGGGCTTGCCGAGTTCCCCGATGCTGTTCTGAATGCAAAACGCCTCGACCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGGAATGGAATCAATTGGAAAGGACAAGTTTTCTCAAAGATGCACAATCACACTTTGACACACAGAATGACTGGTGTTGGCAATACGCTCAAAAGACATTACGAAACTTATCTTTTAGAATATGAATTAGCTCACGACGACGTCGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCCGGTGACTGGGTGAATTGCGGTATATGTGGTGAATGGGCACATTTCGGCTGTGATAGGCGGCAAGGACTTGGAGCATTTAAGGATTATGCGAAAACTGATGGACTGGAGTACGTTTGTCCGCACTGCAACGTATCAAATTTCAGTAAAAAATCGCAGAAAACCGCAAATGGGTATTAA 2214 0.4291 MQQKQQRGKAFNGSSRHCSLLAILSDNSHDNKLKQKQNATSEDQSLYPFPDLSSSGHLQVKVLTKPTADELGRVLEQLQPDFVYLQGSGEIGSLVWDDFDLSVPEALCGLFSSKLPNTVYLETPKGEKLAEALHFKGVPYTIYWKNDFSKYAASHFHQAFFSVAQSTSSHTWDAFQLALASFRLYCVQNNVLPSNGQKSDAEFGPQILGDPPNIDITPCEANMKEEEDESSPETISSVKIYDDDVNMSVLVCGVPCTLIRGCKLHNRTSAPPPPLQVGTFSRGVVTMRCDISTSSSAHISLLVSGSADTCFNDQARLLENHIKVELIEKIQLAQAFPNDQKSKLSSSEPRRSASVACGSSVFEVCIRVPTWASQVLRQLAPNVSYRSLVMLGVASIQGLPVASFNQDDADRLLFFSTRQEKENRPNDPVVSGYPSWLKPPVPSRKRSEPCSRTKSMNASGMEVEDIGSYRQKLNLAAMRPIPQSNRHKILPFSGFSEGERYDGDIGKSNQLLAPVKHNVVGSNAVTHRKSVSNSFQAHQIISLNPLPMKKHGCDRAPIRACSEEEFLRDVMQFLMLRGHTRLIPQGGLAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMHNHTLTHRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCNVSNFSKKSQKTANGY 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1167 737 CDD ARID 562 660 - -
Lal21g1167 737 CDD PHD_ARID4_like 670 721 - -
Lal21g1167 737 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 8 737 - -
Lal21g1167 737 MobiDBLite consensus disorder prediction 423 459 - -
Lal21g1167 737 SUPERFAMILY ARID-like 561 675 IPR036431 GO:0003677
Lal21g1167 737 SUPERFAMILY FYVE/PHD zinc finger 663 725 IPR011011 -
Lal21g1167 737 SMART ARID_2 557 660 - -
Lal21g1167 737 Pfam ARID/BRIGHT DNA binding domain 563 660 IPR001606 GO:0003677
Lal21g1167 737 Gene3D - 557 663 IPR036431 GO:0003677
Lal21g1167 737 ProSiteProfiles ARID domain profile. 560 664 IPR001606 GO:0003677
Lal21g1167 737 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 8 737 IPR042293 -
Lal21g1167 737 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 727 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1167 Lal-Chr21 14343081 14350268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1167 8 736 ARID Transcription Factor Family AT3G43240 62.384 0.0 923
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal21g1167 ARID 3.9e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1167 21 14343081 14350268 Lal21g1167 21 14343081 14350268 ECH
Lal17g1474 17 16111934 16120325 Lal21g1167 21 14343081 14350268 LSH