Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1155 ATGCAGAGCCAACTTGTATGTAATGGGTGTAGGAACATTTTGCTTTACCCTAGAGGAGCAACCAATGTTTGCTGTGCATTGTGCAACACCATTACCTCTGTTCCCCCACCTGGAATGGAAATGTCACAAATTTACTGTGGAGGCTGCAGGACCTTGCTAATGTATGCACGCGGAGCTACAAGCGTAAGATGTTCCTGCTGTCACACTGTAAACCTTGTACCAGCGTCTAATCAAGTTAGCCATATCCATTGTGGGAACTGCCGGACAACACTGATGTATCCTTATGGAGCTCCCTCGGTCAAGTGTGCTCTTTGTCACTATATCACTAATGCTAGTACCACCAACGGGAGGCTTCCGATTCCCGGCCAAAGACCTGACGGAACAACCAACCCCGGAACGGTATCGTCTGCAACAACATCTCAGAGCCAAACCGTTGTAGTAGAAAATCCTATGTCGGTTGATTCGAGTGGAAAACTGGTGAGCAATGTTGTTGTAGGTGTTACAACAGATAAGAAATGA 519 0.4682 MQSQLVCNGCRNILLYPRGATNVCCALCNTITSVPPPGMEMSQIYCGGCRTLLMYARGATSVRCSCCHTVNLVPASNQVSHIHCGNCRTTLMYPYGAPSVKCALCHYITNASTTNGRLPIPGQRPDGTTNPGTVSSATTSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1155 172 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Lal21g1155 172 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Lal21g1155 172 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 109 IPR005735 -
Lal21g1155 172 Pfam LSD1 zinc finger 7 31 IPR005735 -
Lal21g1155 172 Pfam LSD1 zinc finger 84 108 IPR005735 -
Lal21g1155 172 Pfam LSD1 zinc finger 46 70 IPR005735 -
Lal21g1155 172 PANTHER PROTEIN LSD1 1 172 - -
Lal21g1155 172 MobiDBLite consensus disorder prediction 116 142 - -
Lal21g1155 172 MobiDBLite consensus disorder prediction 126 142 - -
Lal21g1155 172 PANTHER PROTEIN LSD1 1 172 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1155 Lal-Chr21 14180298 14186146 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lal21g1155 zf-LSD1 8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1155 - K12191 gmx:100776394 322.013