Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1138 ATGGCTGGAATGATTCCAGGAGTTGAATCTGCTAGAAGAAGACGGTTCCATCATAGTGGAGGGTGCTTTGATTCACCTTCTATGTCTACCAATAATTCCACAAGACGTTCTTCTTTTAGTTTATATGCAACCAATCATGAATCCTTTATTTCCTCATCTTCTTCATTGCAAAGAAACATGTTTTATCAGACATACCCAGATGAAAATATGGTAGGAGCAGCAAGAGAAGCTAAAGAAAGATTGGATGAAAAGTTCAAACCACATATGAAATCAGAAAACAAAAGTGAAAACACCTTAAATTGTGTGGATGGAAGAAGGACAAACCAAAGAGAGTTGCACATTTATGGGTCAAAGAAGAGTGGATTAAGGAAATTCAGTTGGATCAAATTGAGTTGGAAGGCCACAGAACAAGAAGATTGTGTTGTGTGTTTGGAATCACTCAAAGATGGAGAGACATTGATTCATCTTTCTTGTCAACATAGGTTCCATTCTAGATGCTTGAAACCATGGTTAGATAAAAATTCTCATTGTCCATGTTGTAGAACTACCATTATTTCCACCTAG 564 0.3688 MAGMIPGVESARRRRFHHSGGCFDSPSMSTNNSTRRSSFSLYATNHESFISSSSSLQRNMFYQTYPDENMVGAAREAKERLDEKFKPHMKSENKSENTLNCVDGRRTNQRELHIYGSKKSGLRKFSWIKLSWKATEQEDCVVCLESLKDGETLIHLSCQHRFHSRCLKPWLDKNSHCPCCRTTIIST 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1138 187 SMART ring_2 140 180 IPR001841 -
Lal21g1138 187 MobiDBLite consensus disorder prediction 1 35 - -
Lal21g1138 187 SUPERFAMILY RING/U-box 129 185 - -
Lal21g1138 187 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 92 - -
Lal21g1138 187 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 114 183 - -
Lal21g1138 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 186 IPR013083 -
Lal21g1138 187 Pfam Ring finger domain 139 181 IPR001841 -
Lal21g1138 187 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Lal21g1138 187 CDD RING-H2_PA-TM-RING 139 181 - -
Lal21g1138 187 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 114 183 - -
Lal21g1138 187 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1138 Lal-Chr21 13959741 13961310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1138 1 86 C3H Transcription Factor Family AT2G15580 47.000 5.34e-18 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1138 - - gmx:100527583 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1138 21 13959741 13961310 Lal21g1138 21 13959741 13961310 ECH
Lal17g1380 17 15214155 15215475 Lal21g1138 21 13959741 13961310 LSH
Lal21g1138 21 13959741 13961310 Lal4g1389 4 18154990 18156146 LSH