Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1118 ATGCATCAGATTATTGAACTTTGTGACCTCAAGGGAGAGGTTTTGAAAAAGGCTCACAAAACAATTGATTCATATGCCGAACGTGGTCTGCGTTCCTTAGGTGTTGCCCGCCAGAGTGTTCCAGAGAAGACCAAGGAGAGTGCAGGAGATCCATGGGAATTCTTGGGTCTCTTGCCCCTCTTTGACCCTCCAAGGCATGATAGTGCTGAGACTATTCGTCGTGCTCTTGAGCTTGGTGTCAATGTTAAGATGATTACAGGTGATCAACTTGCCATTGGCAAAGAAACCGGTCGTAGGCTTGGAATGGGCACCAACATGTACCCTTCCTCCTCCCTTCTTGGTAATAGCAAGGATTCTGCTATTGCATCAATCCCAGTTGATGAACTCATTGAGAAGGCTGATGGATTTGCAGGAGTTTTCCCTGGTAACTTGATTACTCTTAAATCATGTTTGAAGATGAATAATTTTTATAGAATAATCACTTATTTTGTGAAAGATCTCATGATGATTTTGATTATAAGTTGCTTCGAATACAAAGATCTTAATGAAATCTTTGCCACCGGAGTTGTTCTTGGGACATACATGGCCATCATGTCCGCGGTCTTTTTCTATGTTGTTCATGACACTGATTTCTTCTCTAAATTTTTTGGTGTCAAGTCAATTGCAGATAGTGAGGAGCATCTCAACTCAGCTCTCTACCTTCAAGTCAGTATCATTAGTCAAGCACTCATCTTTGTGACTCGATCAAGGAGTTGGTCATATTTTGAACGCCCTGGTGCCATGCTTTGTATAGCCTTTCTTGCTGCACAACTGGTTGCTACTATCATTGCTGTGTATGCACATTGGGACTTTGCCAGAATCAATGGAGTTGGATGGAAATGGGCTGGAGTAATCTGGATCTACAGTATTGTTACCTATATCCCTCTTGATATCTTGAAGTTTTTTATTCGCATGGGACTCACAGGTAGTGCTTGGGACAACATGCTCCAAAACAAGACTGCATTCACAACAAAGAAAGACTATGGAAAAGGAGAGAGGGAAGCTCAATGGGCTGTGGCTCAACGCACATTACATGGTCTTCAAGTTCCTGAAACCCACTTTAACAACAACCATGAGCACTCTGAAATAGCCGAGCAAGCTAAGAAGCGTGCCGAGGCTGCTAGGTAA 1167 0.4284 MHQIIELCDLKGEVLKKAHKTIDSYAERGLRSLGVARQSVPEKTKESAGDPWEFLGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGNSKDSAIASIPVDELIEKADGFAGVFPGNLITLKSCLKMNNFYRIITYFVKDLMMILIISCFEYKDLNEIFATGVVLGTYMAIMSAVFFYVVHDTDFFSKFFGVKSIADSEEHLNSALYLQVSIISQALIFVTRSRSWSYFERPGAMLCIAFLAAQLVATIIAVYAHWDFARINGVGWKWAGVIWIYSIVTYIPLDILKFFIRMGLTGSAWDNMLQNKTAFTTKKDYGKGEREAQWAVAQRTLHGLQVPETHFNNNHEHSEIAEQAKKRAEAAR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1118 388 SUPERFAMILY HAD-like 53 151 IPR036412 -
Lal21g1118 388 Gene3D - 177 318 - -
Lal21g1118 388 PANTHER PLASMA MEMBRANE ATPASE 180 388 - -
Lal21g1118 388 PANTHER PLASMA MEMBRANE ATPASE 2 143 - -
Lal21g1118 388 PRINTS H+-transporting ATPase (proton pump) signature 18 36 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal21g1118 388 PRINTS H+-transporting ATPase (proton pump) signature 133 149 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal21g1118 388 PRINTS P-type cation-transporting ATPase superfamily signature 56 67 - -
Lal21g1118 388 PRINTS P-type cation-transporting ATPase superfamily signature 78 88 - -
Lal21g1118 388 Gene3D - 58 167 IPR023214 -
Lal21g1118 388 Gene3D - 1 57 IPR023299 GO:0000166
Lal21g1118 388 PANTHER CALCIUM-TRANSPORTING ATPASE 2 143 - -
Lal21g1118 388 PANTHER CALCIUM-TRANSPORTING ATPASE 180 388 - -
Lal21g1118 388 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 4 67 IPR023299 GO:0000166
Lal21g1118 388 SUPERFAMILY Calcium ATPase, transmembrane domain M 181 318 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1118 Lal-Chr21 13760856 13763249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1118 181 388 Primary Pumps ATPases AT3G42640 76.077 7.35e-106 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1118 K01535 - gmx:100778065 326.25