Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1115 ATGGCTATGGAGAATAAAAGGGGTCATGTGGTTGATGAAGAAGAGGTCAGTGACTCTTTTCCTGTAGGTATGCGTGTCCTTGCTGTGGATAATGACCCAATTTGCCTAAGAGTTTTAGAGACCCTTCTTCACAAATGCCACTATCAAGTTACTACAACTAATAAGGCAATTGAGGCACTTAGAGTGTTGAGGGAAAACAGAAATAAATTTGACCTTGTCATTAGTGATGTGAATATGCCAGACATTGATGGATTTAAGCTCCTTGAATTGGTGGGGCTTGAAATGGACTTACCTGTTATCATGTTGTCGGCACACAGTGATACAACGTTGATAATGAAGGGTGTTGCACACGGTGCGTGTGGCTATTTGCTGAAACCTGTTCGAATTGAGGAGCTCAAGAACATATGGCAACACGTCGTGCGAAGAAAACAATTTGTTGGTGAGGTTAAGCCTTCCAAAGATCTCGGTAGGAGAAGGAAGGACCAAGGTGAGGATGAAGAAGAAGATCTCGAAGGGGATGAAGAAAAGATTGAGGACCCCTCAGCACAGAAGAGGCCTCGTTTGGTTTGGACAATTGAGCTGCATAAAAATTTTGTTAATGCAGTTAATCAACTTGGCCATGAAAAGGCTGTTCCAAAAAAAATACTCGACCTTATGAATGTTAAAGGGATTACTCGGGCAAGTGTGGCAAGTCATCTGCAGAAATATAGACAGTATCTTCAAAAAGCAACCCAACAAGCAAGTACGATTGCTGTCGTTGGTGGTAGTGATTCTCACATCCGGACGGGTTCAATAGATGGACATGGAGATTTTTGTGCCTCGTCGAGATCGGGAAGGATTTCAACCACTACATTACCATCAAGTGGAATTTTCGGTAGGCTGAATTCCCCAACTGGCTTAAACAGGAGAGGAATTAGTCCTTCTTCGCTAGTAAGTCCCGTTCAGCCTCAAAATACTAACAGCTCATTAAACACAGTTGGAAGCATTCGGCCGTCCGATTTTCCTTCAAATCAAAGCTCAAGTTTATTGCATGGGATTTCAACATCACTTGAGCTTGCACCGTCTAAACAAAGCAACCGTGCAACTGGTATAACACAGTTAAGTCAAGTTGATCCAAGAGGATTTGCTATCTCTTCTGGCTTGCCAGACAGTAGGGTTATTGTTGATAGTGTAAATAATTCTCTACCTTGTGTCGCAAGCAATCATTCAATGTTACATGGGAACTCACAACAAACCGATTCAGGAGCATTTAGAAATCAGTCTTTTGTTAGAGCAGCTCCTTTGAGCACAGAATCTTTTGATGTCAGCATGTGTGGTTCTTCTGATATCCTGAACTATAATCAGTGTAATGAAAATTGGCAGATTGCTCGGTTGTCTAACTTTCCGGCGAATTACTTGCAAATGTATGATACTTTTAATAATGACCAACTTTCTCCCACTGACATAAATGTTTCGAACTCAAAAACTCTTATTCGTAACAGTCCAGTCAATTTCTCATCCAGAATTGCACTTTCTGACCCTTTGGAAGATTCTAGAAGTGAGCTGCAATGTCAAGAACTATTGGATGGGAATATTTTACGGCCTCCAAGTTACACACCACGACAAAGACGGGAAGAACATAGACTGGACTATAACCAAAACACCAGTCGTCCCTTCGATGCAGTAAATTCACAGGCTTTTCCTAGTGGAGTGACTTCTTCGGGACACGGTTTAAACCGAAGTAATACAATATGTAGCAATAGGATTGATGCATCTTTTCTTGGCCAAGTGAATAGGGCTTCCCAATCAATGCCCCAGTGCAATGAAGATAAGAAACTTTCTTTGGACACAAGACTCAAGTCAAACGATGCCTACATTTCGGAGCAAGCGACCTTGGATGAGATAATGGGTGCAATGGTCAAAAGGGTATGA 1911 0.4186 MAMENKRGHVVDEEEVSDSFPVGMRVLAVDNDPICLRVLETLLHKCHYQVTTTNKAIEALRVLRENRNKFDLVISDVNMPDIDGFKLLELVGLEMDLPVIMLSAHSDTTLIMKGVAHGACGYLLKPVRIEELKNIWQHVVRRKQFVGEVKPSKDLGRRRKDQGEDEEEDLEGDEEKIEDPSAQKRPRLVWTIELHKNFVNAVNQLGHEKAVPKKILDLMNVKGITRASVASHLQKYRQYLQKATQQASTIAVVGGSDSHIRTGSIDGHGDFCASSRSGRISTTTLPSSGIFGRLNSPTGLNRRGISPSSLVSPVQPQNTNSSLNTVGSIRPSDFPSNQSSSLLHGISTSLELAPSKQSNRATGITQLSQVDPRGFAISSGLPDSRVIVDSVNNSLPCVASNHSMLHGNSQQTDSGAFRNQSFVRAAPLSTESFDVSMCGSSDILNYNQCNENWQIARLSNFPANYLQMYDTFNNDQLSPTDINVSNSKTLIRNSPVNFSSRIALSDPLEDSRSELQCQELLDGNILRPPSYTPRQRREEHRLDYNQNTSRPFDAVNSQAFPSGVTSSGHGLNRSNTICSNRIDASFLGQVNRASQSMPQCNEDKKLSLDTRLKSNDAYISEQATLDEIMGAMVKRV 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1115 636 SUPERFAMILY Homeodomain-like 183 242 IPR009057 -
Lal21g1115 636 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Lal21g1115 636 MobiDBLite consensus disorder prediction 153 182 - -
Lal21g1115 636 SMART REC_2 24 136 IPR001789 GO:0000160
Lal21g1115 636 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Lal21g1115 636 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 635 - -
Lal21g1115 636 Gene3D - 23 156 - -
Lal21g1115 636 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 186 238 IPR006447 GO:0003677
Lal21g1115 636 Gene3D - 181 243 - -
Lal21g1115 636 SUPERFAMILY CheY-like 23 150 IPR011006 -
Lal21g1115 636 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 635 IPR045279 GO:0009736
Lal21g1115 636 Pfam Myb-like DNA-binding domain 189 237 IPR001005 -
Lal21g1115 636 CDD REC_typeB_ARR-like 26 140 - -
Lal21g1115 636 PIRSF RR_ARR_type-B 146 599 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lal21g1115 636 PIRSF RR_ARR_type-B 1 154 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lal21g1115 636 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 241 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1115 Lal-Chr21 13705319 13710191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1115 15 352 Response Regulator Gene Family AT2G25180 49.315 5.26e-104 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lal21g1115 Response_reg 1.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1115 K14491 - gmx:100776075 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1115 21 13705319 13710191 Lal21g1115 21 13705319 13710191 ECH