Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1102 ATGTTTGACTGCGGTTACAACTCAAAATACGTTGGTGGCCAGCGGGAAAAGTTTGTGAGGTTGGATGACTTGGATTCTAGACTATCTTCACCTTCTAATTCTGGAACCAGAACACATGGATTCAGTATTGATAAATTAAGCCATGGTGGCCATGGAAGCAGTGCAACTACCTCTAGGTCTTTTAAAAGGGGAATGAAAAAGGGATCTGAAGGCCTGAAGTCTATTGGTCGATCACTTGGATTTGGGGTACCCAACGCAGTGTTCCCAGAAGATCTTAAAGTTTCAGAAAAGAAGATATTTGACCCTCAAGACAAATTTTTGCTGTTGTGGAATAAGCTTTTTGTTATCTCATGCATTCTGTCTGTATCTGTTGATCCGCTGTTTTTTTATCTCCCTGTCATCAATGATTCACTGAAGTGTCTTGGTATAGACCAAAAGTTGGCAATTATAGTTACCACCTTGAGGACTGTTATCGATGCTTTCTATCTTATACACATGGCTCTCCAATTTCGCACTGCTTATATTGCTCCATCATCTCGTGTTTTTGGACGGGGTGAGCTTGTGATAGATCCAGCACAGATAGCCAAGCGATACTTGCGCCGATATTTCATTATTGATTTCCTATCAGTGTTGCCCTTACCACAGAATATTTTGACCACCATCTGCTCTTTGCTTCTTGTATTCAAGTTGCGGGTTGGTTTTTGGGGTTTACCTGGGATGCTTGATGGAAGTCTCTTCTTACTAGGTAAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCCGATGTACTAGCAACAAAGCAGGCCTTGCTGTTCATTATCTTGCTTCAGTACATTCCCAGATTCCTCCGGATGGTACCATTGACTTCAGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCCGCATATTATTTGCTCTTATTCATGCTTGCCAGCCATATAGTTGGGTCATTTTGGTACTTGTTAGCTGTTGAACGCAATGACTCATGCTGGCAGAAGGCTTGTAGAGAATCTATTGACATCCATTGTAATAAAAACTTCTTGTATTGTGGCAACCAATACATGAATGGTTATAGTGCCTGGCAGAATAAAAGTAAAGATATTCTCAATTCTGAGTGCTCTACAGGCGATGATGCACCTTTTGATTATGGAATTTTCAGTCAAGCATTGTCATCTGGTATTGTTTCATCTAAGCAGTTCTTCTCGAAGTACTGTTACTGTTTATGGTGGGGGCTCCAGAACTTGAGTACACTTGGCCAGGGGCTTGACACTAGTACCTATCCCGGGGAGGTCATATTTTCAATAGCACTAGCCATATCTGGCCTTATCCTCTTTGCGCTTCTGATTGGTAACATGCAGACGTATCTTCAGTCTCTTACCATTAGGCTTGAGGAGATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAGCTTAGAGAGCGTGTGAGACGATATGATCAATATAAGTGGTTAGCCACACGTGGTGTAGATGAAGAAAGTTTGGTTCAGAGTCTACCAAAGGATCTTCGAAGAGACATTAAGCGTCACCTCTGTCTAGCTTTAGTGAGAAGGGTTCCATTGTTTGAGAGTATGGATGAAAGATTGCTTGATGCCATATGTGAGAGACTGAAGCCATGTCTATTTACAGAGAAGACTTACATTGTCCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGCGGTCGTCTTGAGAGTGTTACCACAGATGGTGGAAGGAGTGGATTTTTCAATCGCAGTTTTTTGAAAGAGGCCGACTTCTGCGGTGAGGAGCTTTTAACCTGGGCATTGGATCCCAAATCTGGGTCTAACCTCCCATCTTCTACTCGAACCGTTAAGGCTTTAACAGAGGTCGAGGCATTTGCTTTAATTGCAGAAGAGTTAAAATTTGTTGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACCTTCCGCTTTTACTCCCAACAATGGAGGACATGGGCTGCATGTTTTATCCAAGCAGCATGGCGTCGTTATTCCAAAAGAAAAACCATGGAACTTCATCGAAAGGAAGAACCCGAGGAGTCAAAAGGAACTCGCAACAATGGGAGTGGTGGCTCATACAGTATAGGTGCCACCTTCTTGGCCTCAAGATTTGCAGCTAATGCTCTTCGTGGTGTGCATCGCAATCGGAATGCTAAGACTGCAAGGGAGTTAGTGAAACTACAGAAGCCACCTGAGCCCGACTTCACCGCAGATGAGGCTGACTAA 2313 0.4354 MFDCGYNSKYVGGQREKFVRLDDLDSRLSSPSNSGTRTHGFSIDKLSHGGHGSSATTSRSFKRGMKKGSEGLKSIGRSLGFGVPNAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILSVSVDPLFFYLPVINDSLKCLGIDQKLAIIVTTLRTVIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDFLSVLPLPQNILTTICSLLLVFKLRVGFWGLPGMLDGSLFLLGKIVVWRFLQRSKGSDVLATKQALLFIILLQYIPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDSCWQKACRESIDIHCNKNFLYCGNQYMNGYSAWQNKSKDILNSECSTGDDAPFDYGIFSQALSSGIVSSKQFFSKYCYCLWWGLQNLSTLGQGLDTSTYPGEVIFSIALAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEKTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKTMELHRKEEPEESKGTRNNGSGGSYSIGATFLASRFAANALRGVHRNRNAKTARELVKLQKPPEPDFTADEAD 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1102 770 Gene3D Jelly Rolls 541 661 IPR014710 -
Lal21g1102 770 MobiDBLite consensus disorder prediction 28 66 - -
Lal21g1102 770 ProSiteProfiles IQ motif profile. 679 708 IPR000048 GO:0005515
Lal21g1102 770 Pfam Ion transport protein 109 469 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal21g1102 770 CDD CAP_ED 543 674 IPR000595 -
Lal21g1102 770 SUPERFAMILY cAMP-binding domain-like 472 662 IPR018490 -
Lal21g1102 770 MobiDBLite consensus disorder prediction 699 719 - -
Lal21g1102 770 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 218 - -
Lal21g1102 770 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 246 767 - -
Lal21g1102 770 SMART cnmp_10 543 674 IPR000595 -
Lal21g1102 770 Gene3D Helix hairpin bin 471 534 - -
Lal21g1102 770 Gene3D - 113 468 - -
Lal21g1102 770 MobiDBLite consensus disorder prediction 751 770 - -
Lal21g1102 770 ProSiteProfiles cAMP/cGMP binding motif profile. 543 627 IPR000595 -
Lal21g1102 770 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 246 767 - -
Lal21g1102 770 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 218 - -
Lal21g1102 770 SUPERFAMILY Voltage-gated potassium channels 101 465 - -
Lal21g1102 770 Pfam Cyclic nucleotide-binding domain 564 653 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1102 Lal-Chr21 13572132 13580978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1102 1 768 Ion Channels AT2G23980 72.669 0.0 1132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1102 K05391 - gmx:100820202 1293.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1343 17 14709512 14718099 Lal21g1102 21 13572132 13580978 LSH