Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1029 ATGGATAAGAAAAGGGTCACGGTTCCTCTTGTGTGTCACGGTCACTCTCGTCCAGTGGTTGATCTCTTTTACAGTCCACTTACTCCTGATGGATTCTTCCTCATTAGCGCTAGCAAGGATTATAGTCCTATGCTCAGAAATGGAGAGACAGGGGACTGGATTGGAACATTTGAAGGGCACAAAGGTGCAGTTTGGAGTTGTTGCTTGGATACTAATGCTTTACGCGCTGCAACTGCTTCTGCTGATTTCTCGACGAAAGTTTGGGATGCATTAACAGGGGATGAATTACACTCTTTTGAGCACAAACACATTGTTCGAGCATGTTCTTTTTCTGAGGATACACACCTTCTGCTCACTGGGGGGGTAGAGAAAATTCTCCGTATCTATGATATGAATCGACCTGATGCACCGCCCAGAGAAGTGGATAAATCCCCTGGTTCAGTCAGAACTGTTGCATGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAGGTTATGGGATGTAAGAAGTGGTAAAATAGAACAGACACTTGAAACCAAATCATCTGTGACAAGTGCTGAAGTGAGTCAAGATGGTCGTTATATTACAACTGCGGATGGTTCTACTGTTAAGTTTTGGGATGCAAATCACTATGGATTAGTGAAGAGCTATGATATGCCCTGCACTGTGGAATCAGCTTCCTTGGAGCCGAAGTATGGGAACAAGTTCATTGCTGGGGCATGCAACAAGGGCCACCATGGTCCTGTACATTGTATCCGTTTCTCTCCCGGAGGAGAATCATACGCCTCAGGATCGGAGGATGGAACGATCAGAATATGGCAGACAGGACCATTGACAAATGATGAATCAGAGGCTCTATCCAGAGATGGATCAACTGAAAAGGTGAAGGTAACTGTGGAAGAAGTTTCAGGCAAGATTGAAGGTTTTCATATTGCTGAGGAGGGGAAGTCCATAGAAAAAGAAGAGGCAAAGAAGGAATAA 1002 0.4461 MDKKRVTVPLVCHGHSRPVVDLFYSPLTPDGFFLISASKDYSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSTKVWDALTGDELHSFEHKHIVRACSFSEDTHLLLTGGVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKIEQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANHYGLVKSYDMPCTVESASLEPKYGNKFIAGACNKGHHGPVHCIRFSPGGESYASGSEDGTIRIWQTGPLTNDESEALSRDGSTEKVKVTVEEVSGKIEGFHIAEEGKSIEKEEAKKE 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1029 333 SMART WD40_4 5 47 IPR001680 GO:0005515
Lal21g1029 333 SMART WD40_4 242 281 IPR001680 GO:0005515
Lal21g1029 333 SMART WD40_4 92 130 IPR001680 GO:0005515
Lal21g1029 333 SMART WD40_4 177 214 IPR001680 GO:0005515
Lal21g1029 333 SMART WD40_4 134 174 IPR001680 GO:0005515
Lal21g1029 333 SMART WD40_4 50 89 IPR001680 GO:0005515
Lal21g1029 333 CDD WD40 2 281 - -
Lal21g1029 333 PANTHER OS02G0205400 PROTEIN 1 328 - -
Lal21g1029 333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 249 281 - -
Lal21g1029 333 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 328 - -
Lal21g1029 333 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Lal21g1029 333 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Lal21g1029 333 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Lal21g1029 333 Pfam WD domain, G-beta repeat 250 280 IPR001680 GO:0005515
Lal21g1029 333 Pfam WD domain, G-beta repeat 182 214 IPR001680 GO:0005515
Lal21g1029 333 Gene3D - 9 306 IPR015943 GO:0005515
Lal21g1029 333 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 281 IPR001680 GO:0005515
Lal21g1029 333 SUPERFAMILY WD40 repeat-like 4 283 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1029 Lal-Chr21 12100752 12109361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1029 9 279 Eukaryotic Initiation Factors Gene Family AT2G46290 27.987 2.63e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1029 K13137 - qsu:111987820 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1029 21 12100752 12109361 Lal21g1029 21 12100752 12109361 ECH