Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1010 ATGACTATGGACGATGAGTGCTCTATATACGTTGGGGGTATACCCTACGACACAACTGAAGATACTATTCGCACTATCTTTAATTTGTATGGTGCCATTCTTGATATCAAGATTATCAATGATCAACGCACTGCTGGCAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCAGCTATCGATGCAATTACTGACATGAATGGCAGAAGCATTGGTGGGCGTGCAGTTATGGTGAATGGGGTGAAGACTCGTGGTGGTAGATCGAGTTTCGGTAGAGAACATCACCGTAGAAATTTTGAAAGGAATGAAGATTGGGATCATGGTAGAGGTCGAGACCAAGATTATGATCATGATAGAGTCATATACAGGGATCGACACAGTGATAGGTCTCGGGAGCGTGATAGGTCTCGGGAGCATGATAGGTCTCGGGGCCATGACCGTGACAGAGATAGAGGATTTGAACATATGCATAATTATGATAATGAAAAAGAACCCTTTGTAGATGATGATCGGAGTCGAGACGAAGACTTTTTGGATAACAAACAGGAACACAACACGGCACATGGTCAAGAAAAGGAAGGAGAACAGAACTTAGATTTTGGTAATTGGAGTAAGATAGATAGGACCTCTGATCCTGACAGAAGTTTTGGTGAGGACCAAAATAATCATTCAAGAAGATCCAGTGGTTTGTATGTCACGAATCAACATAGCATGGATCATCCATCAGATTCAAATGGCAATCATGATGATCAGGTTGAAGATCAATTGAAGCATTCAACTCAAAGGCTTGATCAACTGAAAAATGAGGTTTCTCAGATGGAAGAGAAGTTGGAAGAGAAACGACTTCTTACTCTGGAGTTACAAAAGAAGTCTAGGAAAATCGAGGATGCATTGATCAGTGTAAAGAAACAAAGCTCATATCGTCAGATGCAGTTGATCAAGCTGCACAATTGTGTTCTGCAAGTGAAAGATTACTCTGAAAGACTTAAAGCCTCTGAAAAAGAACTCCAGACTCTAGTTGATACGACGGTGTTAGAGAATGACGATGTCACTGGCTAA 1062 0.4105 MTMDDECSIYVGGIPYDTTEDTIRTIFNLYGAILDIKIINDQRTAGKCYCFVTFTNPRSAIDAITDMNGRSIGGRAVMVNGVKTRGGRSSFGREHHRRNFERNEDWDHGRGRDQDYDHDRVIYRDRHSDRSRERDRSREHDRSRGHDRDRDRGFEHMHNYDNEKEPFVDDDRSRDEDFLDNKQEHNTAHGQEKEGEQNLDFGNWSKIDRTSDPDRSFGEDQNNHSRRSSGLYVTNQHSMDHPSDSNGNHDDQVEDQLKHSTQRLDQLKNEVSQMEEKLEEKRLLTLELQKKSRKIEDALISVKKQSSYRQMQLIKLHNCVLQVKDYSERLKASEKELQTLVDTTVLENDDVTG 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1010 353 MobiDBLite consensus disorder prediction 207 222 - -
Lal21g1010 353 CDD RRM_SF 9 80 - -
Lal21g1010 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Lal21g1010 353 Coils Coil 323 343 - -
Lal21g1010 353 Coils Coil 250 294 - -
Lal21g1010 353 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Lal21g1010 353 Gene3D - 2 120 IPR012677 -
Lal21g1010 353 SMART rrm1_1 8 80 IPR000504 GO:0003723
Lal21g1010 353 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 352 - -
Lal21g1010 353 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 352 - -
Lal21g1010 353 MobiDBLite consensus disorder prediction 124 228 - -
Lal21g1010 353 MobiDBLite consensus disorder prediction 124 196 - -
Lal21g1010 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1010 Lal-Chr21 11521469 11526171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1010 9 102 Eukaryotic Initiation Factors Gene Family AT1G71770 30.851 6.99e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1010 - - vun:114179118 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1010 21 11521469 11526171 Lal21g1010 21 11521469 11526171 ECH