Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0840 ATGACCGAACCAGACCACAACCATGACGCGTTGCCTTCTTCTGTTGTCCAAACTAAGCAGAAGAAGCTTCGCAAGAGAAAAAGAGCTCGCAAGTCTGAACAGGTAAATCACCAATTGGAGGAACAAGATAACAAAGATGATACAGAATCCTTGGATGAGGATAATGAAGCAAATTTGAATGATGTGGATGTTAGTGAAGAACAAAATATAGAAGATGATAATAATAATGAGGATAAGGAAGGGGTACAGAACGTTGCTTCTGGAATTATGAGTGTTAAGTCTTTTGAGTCTCTGGGATTGTCTGAACCAACTTACACGGCTATTATGGATATGGGTTTCCACCACATGACTCAGATTCAAGCAAGGTCAATTCCACCACTTCTGATTGGAAAAGATGTTCTTGGTGCTGCACGAACAGGGGCCGGAAAAACTCTTGCCTTTTTAATTCCAGCTGTGGAATTGCTGTACAACATTCAGTTTACACCTCGCAGTGGTACCGGTGTTGTTGTAATATGCCCGACTAGAGAGCTTGCAATTCAGGTACCAAATGTTGATCCTCTTGCTCATTTTTTCTTGCATTATATGTACATATGCACGGAAACTGCACCGTTGGAAGGAATGCTAGCTTCCTTGACACACGCTGTAGCAAAGGAACTACTCAAGTATCATTCACTAACACTTGGATTGGTTATTGGAGGTTCAGGTAGAAAGGGGGAAGCTGAACGAATTGTTAAAGGGGTAAATCTGTTGGTAGCAACGCCTGGGCGTCTTCTCGATCACCTTCAAAATACAAAGGGATTCATATATAAAAACTTGAAGTGCCTCGTGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATTAAGATACTTCCTAAGAGTAGGCAAACAGCTCTGTTTTCAGCCACACAAACGAAGAAGGTTAAGGATCTTGCTCGCTTGTCATTTCAGACAACTCCTATCTACATTGATGTGGATGATGGGAGAACAAAGGTCACAAATGAAGGATTGCAGCAAGGCTATGTTGTTGTTTCTTGTGCCAAGCGTTTTGTTGTTCTATATTCATTTTTGAGGAGATATCAGTCCAAAAAGGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCGGACCTTCTGAAGTGCACTGGGTTGGATTGCTTAAATATCCATGGAAAACAAAAGCAGCATGCCCGGACAACTACCTTCTTTAATTTCTGCAAAGCAGAAAAGGGGATCTTGCTATGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCGAAGGAATATATTCATCGGGTTGGTAGAACAGCTCGCGGGGAAGGTGGAAAAGGAAATGCGTTGCTTTTTCTGATTCCAGAAGAATTGCAATTTCTTCGCTATTTGAAGGCAGCAAAGGTTCCTGTGAAAGAGTATGCATTTGAAGAAAAGAAGCTTGCAAATGTGCAGTCGCAACTGGAGAAGTTGGTGGCTGGTATTTATCACTTGAACAATATGGCTAAAGATGCTTATAGGTCATACTTATTAGCATACAATTCACACTCTATGAAGGATATATTCAACGTTCACCGCCTTGATTTACTGGCTGTTGCTGCCTCATTCTGTTTTTCAAATCCGCCGAAGGTGAATTTGAACATAGACAGCAGTGCTTCGAAGCATAAGAAGAAAATTCGTAAGGTGGAAGGAAGCAAGCACGAGCTTCCGTGA 1779 0.4182 MTEPDHNHDALPSSVVQTKQKKLRKRKRARKSEQVNHQLEEQDNKDDTESLDEDNEANLNDVDVSEEQNIEDDNNNEDKEGVQNVASGIMSVKSFESLGLSEPTYTAIMDMGFHHMTQIQARSIPPLLIGKDVLGAARTGAGKTLAFLIPAVELLYNIQFTPRSGTGVVVICPTRELAIQVPNVDPLAHFFLHYMYICTETAPLEGMLASLTHAVAKELLKYHSLTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMKQIIKILPKSRQTALFSATQTKKVKDLARLSFQTTPIYIDVDDGRTKVTNEGLQQGYVVVSCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAFEEKKLANVQSQLEKLVAGIYHLNNMAKDAYRSYLLAYNSHSMKDIFNVHRLDLLAVAASFCFSNPPKVNLNIDSSASKHKKKIRKVEGSKHELP 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0840 592 MobiDBLite consensus disorder prediction 45 74 - -
Lal21g0840 592 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 62 184 - -
Lal21g0840 592 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 208 571 - -
Lal21g0840 592 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 276 284 IPR000629 -
Lal21g0840 592 Gene3D - 13 334 IPR027417 -
Lal21g0840 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 486 IPR027417 -
Lal21g0840 592 MobiDBLite consensus disorder prediction 1 80 - -
Lal21g0840 592 Gene3D - 341 586 IPR027417 -
Lal21g0840 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 184 IPR027417 -
Lal21g0840 592 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 330 IPR014001 -
Lal21g0840 592 SMART ultradead3 112 348 IPR014001 -
Lal21g0840 592 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 504 IPR001650 -
Lal21g0840 592 SMART helicmild6 384 465 IPR001650 -
Lal21g0840 592 SMART DUF4217_3 505 568 IPR025313 -
Lal21g0840 592 CDD DEADc_DDX18 104 332 IPR044773 GO:0003724|GO:0005524
Lal21g0840 592 PANTHER RNA HELICASE 62 184 - -
Lal21g0840 592 PANTHER RNA HELICASE 208 571 - -
Lal21g0840 592 Pfam Domain of unknown function (DUF4217) 506 566 IPR025313 -
Lal21g0840 592 CDD SF2_C_DEAD 345 475 - -
Lal21g0840 592 Pfam Helicase conserved C-terminal domain 360 464 IPR001650 -
Lal21g0840 592 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 93 121 IPR014014 GO:0003724
Lal21g0840 592 Pfam DEAD/DEAH box helicase 208 319 IPR011545 GO:0003676|GO:0005524
Lal21g0840 592 Pfam DEAD/DEAH box helicase 117 182 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0840 Lal-Chr21 7697959 7704993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0840 77 484 Eukaryotic Initiation Factors Gene Family AT3G19760 26.098 1.75e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0840 K13179 - gmx:100793807 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0840 21 7697959 7704993 Lal21g0840 21 7697959 7704993 ECH