Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0778 ATGAAATCCACTCTTTCTTCTTTCACAGGTTTTCGATCAGCATCATCATGGTTCGAGTTATATGCTGCATTTTCAACATTCATGATGCTTCTAAGAACAGCCATCAATGATCTCATACCATCCCAAGTTCGATGCTTCATCACAACAAAGCTAGAATCTTTCTTCTCAAATATTTACCAATCAAATAACACTGCATCTCTCACAATTAACCGAATTTGGGACGAAAGTTCGAGAAATAACGAACTTTATCAGGCTGCGTGCAACTACCTTCCCTCGAGAGTAGGTCAAAGTTACAAATCGCTCAAAATCGGAAAACTCGATGACTGTAAAGATCTCATGTTCGCAGTGGATGCAACAGAAGAAGTGGTGGATGAATTTGAAGGCATGAAGTTCACTTGGATGCTAGATGAAGGTTCTTCTGAAAAAGAACGTAGGGATTTGGACAAGGTAGCTTTTAAGTTAAGCTTCAACGAGAAACATAGAGAAATAGCAATGAAAAAGTACATACCCCATGTACTAAAAACATATGAAGAATTCAAATCTGAACGCAAGATTCTTAAACTGAATTCTTGGTCAAATGGGTATTGGGGAGAAAATGAGTTATCACATCCTGCAACATTTGAAACACTTGGTTTGGATCCTGAATTGAAGCAAAGAATTATTAATGATTTGGAACGGTTCTTGAAGAGAAAAGAAATGTATAAGAGAGTGGGTAAGCCATGGAAACGTGGCTACTTATTGTATGGTCCACCAGGAACTGGAAAATCTAGTTTAATTGCAGCTATGGCTAACTATTTGAAATTTGATGTGTATGATTTAGATTTGAATTCTGTTTATTCTAACTCGGATCTCATGAATGCAATGAGAAGTACAACAAGACGTTCAATTATTGTGCTTGAAGATATAGATTGCAACAAAGAGGTGAATGCTCGATCAGTTAGAGACGAGGATAACTCAGATTGTGATTATACCCAAGACGCCAAGGTTGAAGATGTTAAGGTTGAAAGGTTTACTCTGTCTGGTTTACTTAACTGCATGGATGGGTTATGGTCAAGCCACGGAGAAGAGCGAATTATAATATTTACTACAAACCATGTAGAAAAAATTGACCCAGCATTGTTACGCCCTGGTCGAATGGACATGCACATTAACTTGTCTTTCCTTAAACCAAAGGCATTTAGAATCTTAGCCTCTAATTATTTCAACATTGGAGACAAACATCCTCTGTTTGAACAAATTGAAGAGTTGTTGGAGAAAACAGAGTTTACACCTGCAGAAGTAGCTGAACAGCTTATGAGAAATGAAGATCCAGATATTGCTATGGAAGCACTATTAAAATTTCTCTCTGAGATTCACATAGAGAGAGGAGTGAAAAAAGGTTGA 1383 0.3731 MKSTLSSFTGFRSASSWFELYAAFSTFMMLLRTAINDLIPSQVRCFITTKLESFFSNIYQSNNTASLTINRIWDESSRNNELYQAACNYLPSRVGQSYKSLKIGKLDDCKDLMFAVDATEEVVDEFEGMKFTWMLDEGSSEKERRDLDKVAFKLSFNEKHREIAMKKYIPHVLKTYEEFKSERKILKLNSWSNGYWGENELSHPATFETLGLDPELKQRIINDLERFLKRKEMYKRVGKPWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLDLNSVYSNSDLMNAMRSTTRRSIIVLEDIDCNKEVNARSVRDEDNSDCDYTQDAKVEDVKVERFTLSGLLNCMDGLWSSHGEERIIIFTTNHVEKIDPALLRPGRMDMHINLSFLKPKAFRILASNYFNIGDKHPLFEQIEELLEKTEFTPAEVAEQLMRNEDPDIAMEALLKFLSEIHIERGVKKG 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0778 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 436 IPR027417 -
Lal21g0778 460 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 10 455 - -
Lal21g0778 460 Gene3D - 384 451 - -
Lal21g0778 460 CDD AAA 242 386 - -
Lal21g0778 460 SMART AAA_5 241 389 IPR003593 -
Lal21g0778 460 Pfam Domain associated at C-terminal with AAA 39 135 IPR025753 -
Lal21g0778 460 PANTHER BCS1 AAA-TYPE ATPASE 10 455 - -
Lal21g0778 460 ProSitePatterns AAA-protein family signature. 357 375 IPR003960 GO:0005524|GO:0016887
Lal21g0778 460 Gene3D - 198 383 IPR027417 -
Lal21g0778 460 Pfam ATPase family associated with various cellular activities (AAA) 246 385 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0778 Lal-Chr21 6582973 6585415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0778 243 385 Calmodulin-binding Proteins AT3G56690 29.139 2.89e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0778 - K08900 gmx:100789094 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1407 14 15355480 15361904 Lal21g0778 21 6582973 6585415 PCT
Lal19g0979 19 13709504 13716495 Lal21g0778 21 6582973 6585415 PCT
Lal21g0778 21 6582973 6585415 Lal14g1407 14 15355480 15361904 PCT
Lal21g0778 21 6582973 6585415 Lal19g0979 19 13709504 13716495 PCT