Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0776 ATGGAAAACAACCAATCTGCCTCATACCCACCACAACCCCAACCTCCTCCTCCACCCGCTGCATTCCATCAACTTCTCCAACAACAACAACAACAACTTCAAATGTTTTGGAACTACCAGCGCCAAGAAATTGAACACGTCAACGACTTCAAAAACCACCAACTCCCCTTAGCCCGAATCAAAAAAATCATGAAAGCTGACGAGGATGTCCGTATGATCTCCGCCGAAGCCCCGATCCTCTTCGCCAAAGCCTGCGAGCTCTTTATTCTCGAACTCACCATCCGCTCCTGGCTCCATGCGGAGGAGAACAAGCGCCGGACTCTCCAGAAGAATGACATCGCCGCCGCGATTACTCGTACTGATATATTTGATTTTCTTGTTGATATTGTGCCCAGGGATGAGATTAAGGATGATGCTGCTCTTGCTGCTGGGGCTATTTTGGGGGCTACGGCGAGCGGGGTTCCGTATTATTATCCTCCCATTGGACAGCCTGCGGGTGGGATGATGATTGGGAGGCCGGCTGTGGACCCTGCTACGGGGGTTTATGTGCAGCCGCCGTCTCAGGCGTGGCAGTCCGTGTGGCAGACTGGTGCTGAGGATGGGTCTTATGGAAGTGGTGTGAGTAATGGGCAGGGAAATCTTGATGGCCAGAGACTTTTGCCAGTTCCCCGTGATGCCGATGGCCGTAGCAGGTCAAATAGCGGTGGAATCACAGGTGATGCTGATTTGGAGTATGTAAATGCAATGACCATGTTAAGAGAACGTTTCTTTTAG 774 0.5142 MENNQSASYPPQPQPPPPPAAFHQLLQQQQQQLQMFWNYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDAALAAGAILGATASGVPYYYPPIGQPAGGMMIGRPAVDPATGVYVQPPSQAWQSVWQTGAEDGSYGSGVSNGQGNLDGQRLLPVPRDADGRSRSNSGGITGDADLEYVNAMTMLRERFF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0776 257 MobiDBLite consensus disorder prediction 200 239 - -
Lal21g0776 257 SUPERFAMILY Histone-fold 23 126 IPR009072 GO:0046982
Lal21g0776 257 MobiDBLite consensus disorder prediction 200 215 - -
Lal21g0776 257 Pfam Core histone H2A/H2B/H3/H4 38 117 IPR007125 GO:0003677
Lal21g0776 257 Gene3D Histone, subunit A 20 132 IPR009072 GO:0046982
Lal21g0776 257 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 3 217 - -
Lal21g0776 257 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 3 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0776 Lal-Chr21 6547135 6549943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0776 20 217 CCAAT-HAP5 Transcription Factor Family AT3G48590 85.294 4.59e-105 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lal21g0776 CBFD_NFYB_HMF 2.9e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0776 - - pop:7454724 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0776 21 6547135 6549943 Lal21g0776 21 6547135 6549943 ECH