Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0762 ATGGGTCGCAATGTGGATTCAGTGTGTTCGGAGTGTACGAGAAAGTGTCGATTTTTACACGGAAAAGGGAAAAGTTCATCACTTTTACATACCTCTTTCTTCAAGGTCATGTTAGGCGAAGACTTTTCCAAACATATGTATGTTCCTCCAAAGTTTTATCGTAGTGTGCCAGCCAGGGACTTGCTTGATAAGAAAATCATTCTCGAGGACCCAAGTGGAGAGCAATGGAAAGTAACGGTATCATTTGTTGATGGTTCTGTTGCTTTTAAGGAAGGGTGGAGTGCTTTTTCATTCGACCACGGGCTTAAGATTGGACATTTTTTGATATTCCACTATACCAGTGAATCTCACTTTGATGTTTTGATCTATGATGAGTCTACATGTAATATACTTGATTTTTCTAAAACAAGAAATCAGAATAAAAGAAGTCGGGATAGAAATGACTCTTCTGTTAAAGATGGTTTGTTGGATAGACAAGGTTTGAAGGCCTCTGCTGTCTCCATTTCTGATCTGCCAAAAATGAAAAGGCAGCACAGAGAGGTTGATTTAGGAGGAACACAAAATAACATGGAGAAAATTTCAAATTATGATAATATCAATGGAAGGGCCCGATCTGTGTGCATAGAGGACTACGGTGAAGACCCATGTTACATGACAAGCCGAGGTTTAGGAGAAACAGAAAGAGATGCCAAGACCTCCATGTTTGATGTGCTTGACTGTGAAATATTGAATAACTGTGAAGTTAATGGGACTTCTAAACTTGCAAATGTAGATTCAAATGTTTCTGATGTTGATTGTGGATCCCATGCATGTCAAAATGAAGCAATCATGTGTAACAAAGATCCTTCGTACGGAAGGATATTGGGTAAAGGAGCTGCTTCAGATCCATCCGAATTGAAATTGTCTGGATGTAATCATTCTCTTGGACAGAAAGACAATAGTTCATATGACAAGAATCAGACTTTGAAACTTAAAGAAAACAGCGAGAACAATTCCATTATGTCCAACTGGAAAGTTCGAGAGTGCCAATTTCCTGAGGGCTTAGAAAGTGAAAAGATGGTGATATCCCAGAAAACATATGCTTCACAAATTGGCAGTTTCTACAACACCAATCAGATATTCGGTGGGATCCCAAATATCACGGACACTACAAAGAATGGTCAAATGTCTAAAGATATTAAGAAAGAGCTTGTAGACATGATTCCTAGCGTGTACAAGTACAAGGATGAATTGCCAGCAACAGGGAAATTGGGAAGAGGAGCTGCTTCGGATCCATATAAATTTGAATTGTCTGGAAGAAATCAATATCTTGGATCGAAAGACAAAAGCGTGTATGTCAACAAATGTACTACGAAACTTGAAGAAAACAGAAAGAACATTTCCATTATGTCCAACAGGAAAGTTGGAGAGTACCAATTTGCTGAGGGCTTAGGTCATATATCAAAATCGATTAAGAAAGAGGTTGTAGATAAGATGAATTCTAATATGTACAAGGATGAATTTCCAGCAACAGGTGAAACTTCGGAAAGATTTAAGAGCGAACTTCCGGACACAACTCCCTTTGTGTATATGGATGAATTGCTTCCAGCAACAGGGTCATCAAAGGTTATTAAAAGAGAGCCTGGTCAGAGTCTTCAACCGTTGAATGAAGATAATGAGAGTCACTCCCAAACTGCAGCCACTGTCTCCTGTGTCGTGCCAACCGATAATGATACTTTCCTTGAATTGCCTGCACCATTGCCATTGTGTAACAAGAGGGGAATAAAAATGAAGAGGCTGGTGGTGTACCTGCGGGATCGACGGATGAGTTTGTGGCCGGTATTTTACCATGAACAGTCTAATTTTTATGCACTGACAGAAGGATGGTCAGAATATAGTAAAGCAAACAATATTCAACCAAGAGATTTGTGTATATTCGGGGCCGAGAACAAGTCGAATCGAATCATTGCTGTCGATATAGTTCACAAATGA 1971 0.3937 MGRNVDSVCSECTRKCRFLHGKGKSSSLLHTSFFKVMLGEDFSKHMYVPPKFYRSVPARDLLDKKIILEDPSGEQWKVTVSFVDGSVAFKEGWSAFSFDHGLKIGHFLIFHYTSESHFDVLIYDESTCNILDFSKTRNQNKRSRDRNDSSVKDGLLDRQGLKASAVSISDLPKMKRQHREVDLGGTQNNMEKISNYDNINGRARSVCIEDYGEDPCYMTSRGLGETERDAKTSMFDVLDCEILNNCEVNGTSKLANVDSNVSDVDCGSHACQNEAIMCNKDPSYGRILGKGAASDPSELKLSGCNHSLGQKDNSSYDKNQTLKLKENSENNSIMSNWKVRECQFPEGLESEKMVISQKTYASQIGSFYNTNQIFGGIPNITDTTKNGQMSKDIKKELVDMIPSVYKYKDELPATGKLGRGAASDPYKFELSGRNQYLGSKDKSVYVNKCTTKLEENRKNISIMSNRKVGEYQFAEGLGHISKSIKKEVVDKMNSNMYKDEFPATGETSERFKSELPDTTPFVYMDELLPATGSSKVIKREPGQSLQPLNEDNESHSQTAATVSCVVPTDNDTFLELPAPLPLCNKRGIKMKRLVVYLRDRRMSLWPVFYHEQSNFYALTEGWSEYSKANNIQPRDLCIFGAENKSNRIIAVDIVHK 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0762 656 ProSiteProfiles B3 DNA-binding domain profile. 31 126 IPR003340 GO:0003677
Lal21g0762 656 SUPERFAMILY DNA-binding pseudobarrel domain 583 647 IPR015300 -
Lal21g0762 656 SMART B3_2 33 126 IPR003340 GO:0003677
Lal21g0762 656 SMART B3_2 561 654 IPR003340 GO:0003677
Lal21g0762 656 CDD B3_DNA 587 639 IPR003340 GO:0003677
Lal21g0762 656 Gene3D - 27 128 IPR015300 -
Lal21g0762 656 Gene3D - 543 656 IPR015300 -
Lal21g0762 656 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 11 654 IPR044837 -
Lal21g0762 656 ProSiteProfiles B3 DNA-binding domain profile. 595 656 IPR003340 GO:0003677
Lal21g0762 656 CDD B3_DNA 32 124 IPR003340 GO:0003677
Lal21g0762 656 Pfam B3 DNA binding domain 583 647 IPR003340 GO:0003677
Lal21g0762 656 Pfam B3 DNA binding domain 33 122 IPR003340 GO:0003677
Lal21g0762 656 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1 11 654 - -
Lal21g0762 656 SUPERFAMILY DNA-binding pseudobarrel domain 30 128 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0762 36 130 B3 DNA Binding Superfamily AT1G49475 35.789 1.97e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal21g0762 B3 2.9e-08 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0762 21 6316247 6322224 Lal21g0762 21 6316247 6322224 ECH