Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0756 ATGCATCATAATGTTAACAACCCATTCCCACATAAAACTATCATCCATGCCAATGTTTTATATCTACTTTTGGTATCACACAAACAAACCCTTACACTTAGAATTCAATTTGAAGCATTCAATCCCTTATCCTCCAAACCCTTCAATTCCCTCAACTTCTTCATGTCTATCATTTCCTTCAACATCTCTCACTCATGTCTTCTCCCTTCTCCTTCCTCACTCTTCCACAACACCAAATCCAAACATTACTTTTTAACTATCCCTTCTTCCAAACCCTTCACTCTCAAACAACTCTCTTCAATCAATAACCCCAAAACGCACCGTTTCACTTTCACCTCATTCGTAGCGCAGACTTCCGACTGGGCCCAACAAGAAGACAGCAATACCGCCACTTTTGAAGACCAGGAAGATAGTCAGACCGAGGCCGCCGGGCTTTCAGAATGGGAAACTAATGCCGAAGACGCCGAAGGCGAAGGGGGGGAATTTGAGGATGGTAGTTTTGTGGAACCACCTGAGGAAGCTAAGCTTTTTGTTGGAAATTTGCCTTATGACATTGACAGTCAGAAATTGGCTATGCTTTTCGAGGATGCTGGAACTGTTGAGGTTGCTGAGGTTATTTTTAATAGGGACACTAACCAGAGTCGCGGGTTCGGATTTGTGACCATGAGTACAGTTGAAGAAGCTGAGAATGCAGTGGAGAAGTTTAACCGCTATGGCTTAGATGGAAGACTATTGACTGTTAATAAGGCTTCTCCAAGAGGATCTCGGGCTGAACGGCCACCTAGTAACTTTGAAAATGCTTTAAAAGTCTATGTTGGTAACTTGCCATGGGATGTTGATAATAATCGTCTGGAGCAAATTTTCAGTGAGCACGGTAAGGTTGAGAGTGCACGGGTTGTCTTTGACAGAGAGACTGGCCGATCACGTGGCTTTGGCTTTGTCACATTTTCTGATGAGACTGAAATGAATGATGCCATTGCTGCTCTTGATGGACAGAGTTTGGACGGGAGGGCAATAAGAGTGAATGTCGCCGAGGACAGGCCCAGGCGTAGCTCCTTTTAA 1062 0.4426 MHHNVNNPFPHKTIIHANVLYLLLVSHKQTLTLRIQFEAFNPLSSKPFNSLNFFMSIISFNISHSCLLPSPSSLFHNTKSKHYFLTIPSSKPFTLKQLSSINNPKTHRFTFTSFVAQTSDWAQQEDSNTATFEDQEDSQTEAAGLSEWETNAEDAEGEGGEFEDGSFVEPPEEAKLFVGNLPYDIDSQKLAMLFEDAGTVEVAEVIFNRDTNQSRGFGFVTMSTVEEAENAVEKFNRYGLDGRLLTVNKASPRGSRAERPPSNFENALKVYVGNLPWDVDNNRLEQIFSEHGKVESARVVFDRETGRSRGFGFVTFSDETEMNDAIAALDGQSLDGRAIRVNVAEDRPRRSSF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0756 353 PANTHER RIBONUCLEOPROTEIN 57 353 - -
Lal21g0756 353 SMART rrm1_1 269 342 IPR000504 GO:0003723
Lal21g0756 353 SMART rrm1_1 175 248 IPR000504 GO:0003723
Lal21g0756 353 Gene3D - 115 257 IPR012677 -
Lal21g0756 353 CDD RRM_HP0827_like 175 252 - -
Lal21g0756 353 SUPERFAMILY RNA-binding domain, RBD 170 261 IPR035979 GO:0003676
Lal21g0756 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 340 IPR000504 GO:0003723
Lal21g0756 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 245 IPR000504 GO:0003723
Lal21g0756 353 PANTHER OS02G0815200 PROTEIN 57 353 - -
Lal21g0756 353 Gene3D - 258 353 IPR012677 -
Lal21g0756 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 252 IPR000504 GO:0003723
Lal21g0756 353 SUPERFAMILY RNA-binding domain, RBD 261 351 IPR035979 GO:0003676
Lal21g0756 353 CDD RRM_HP0827_like 269 345 - -
Lal21g0756 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 346 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0756 Lal-Chr21 6243998 6247209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0756 176 350 Eukaryotic Initiation Factors Gene Family AT3G16380 36.170 9.30e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0756 - - gmx:100810381 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0756 21 6243998 6247209 Lal21g0756 21 6243998 6247209 ECH
Lal14g1485 14 15829057 15832226 Lal21g0756 21 6243998 6247209 PCT
Lal19g1047 19 14254709 14257874 Lal21g0756 21 6243998 6247209 PCT
Lal21g0756 21 6243998 6247209 Lal14g1485 14 15829057 15832226 PCT
Lal21g0756 21 6243998 6247209 Lal19g1047 19 14254709 14257874 PCT