Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0733 ATGGAAGATAAGCTTTCTTTTGAAGTGCCTTTATCTAGGGGAATATTTTTGCAAGATTTTAACCATATTGATCAATTTCATGTGAATGTTTCCTCATCCAATAATCCATTTTTTGGGACCCAACCTCAAAACTTTGACCCTTTTAATCATAACTTTACATATGGATATGCATCAACTGGCTTTGATGTTTATGAGTGCAAGCCTTTTGTGGAGAATAATATTAGTGGGCATGCTCATGTTATTAACAACTTCCAATTTGGTGGTTATAGCTTGAACCTCCTTCAGAGAAACCAAATTGTTTCCATGGTTGCAAGCAGAAATTATTTGCAGTTTAATAATCCTCCTGAAACAATAAAGCCTGTGAATTTTGTTGCACCAGATGAAGCATCATGCATATCCCCATTGAGTTATAACAAAGAAGTTGGTCTGAACAAAATCAATAACAATAGGGCATATTCAAGCACTACTAGGTCATGCAAAGCTAAGAGAAAGTCCAACATAGTAAAGGGACAATGGTCAGCAGATGAAGATAGATTGTTGATTCAATTGGTCGAACAATATGGAGTGAGAAAGTGGTATCTTATTGCTCAGATGCTGCCTGGAAGAATTGGCAAACAATGCAGAGAGCGGTGGTTTAACCATCTAAGGCCTGACATTAAGAAGGACACATGGAGTAATGAGGAGGATAAGATACTAATCCAAGCTCACAAAGAGATGGGAAATAAGTGGGCAGAGATTGCTAAAAAATTACCAGGAAGAACTGAGAATTCAATCAAAAACCATTGGAATGCAACAAAGAGAAGGCAATATTCTGATCAAAGAAATTCTCGTTCAAAGCACCCTAAAGGAACTCTTTTGCATGAATATATCAAGAGCTTGAACTTAGACAAAAATCCACCAAAAGACTATAGGAAAAGATCTTCTACTAATGCTAGGGCAATGAAAAACAACACTAGCACAAACAAAATAGCAGCAACAACCCTAGTTCAGTCACATAATATTACTGATCAATCTTCTCTAAGTGATTGTGTGGTACCAAATTATGATCATTTCAATGAGGCCCATGATGATTTTTGCTTTGATGAGCATATGTTTAAAGATGGGTATAGTATTGATTCTCTTCTAGATGATATTCCTTGTGCTCCTCCTACTATGAATGAAAAATATATTGATGAAAAAGTGCAAGGTGCTCCTCATAATATGGAAGGAAATCATTTTGATATTGAAGGAATTCAATGTGACAATCATGTTCCTATTGTTAATCTTGATGACAATCCTTTTGAGATCACAGAAATGCCAAAGGAGATTATGGAACCTATTATTGGAGTTGAAGTTAAGAAGAAGGTAGATTATTGGGTGGAGATGTTGTCTTTGTTCAAGTGA 1383 0.3579 MEDKLSFEVPLSRGIFLQDFNHIDQFHVNVSSSNNPFFGTQPQNFDPFNHNFTYGYASTGFDVYECKPFVENNISGHAHVINNFQFGGYSLNLLQRNQIVSMVASRNYLQFNNPPETIKPVNFVAPDEASCISPLSYNKEVGLNKINNNRAYSSTTRSCKAKRKSNIVKGQWSADEDRLLIQLVEQYGVRKWYLIAQMLPGRIGKQCRERWFNHLRPDIKKDTWSNEEDKILIQAHKEMGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSDQRNSRSKHPKGTLLHEYIKSLNLDKNPPKDYRKRSSTNARAMKNNTSTNKIAATTLVQSHNITDQSSLSDCVVPNYDHFNEAHDDFCFDEHMFKDGYSIDSLLDDIPCAPPTMNEKYIDEKVQGAPHNMEGNHFDIEGIQCDNHVPIVNLDDNPFEITEMPKEIMEPIIGVEVKKKVDYWVEMLSLFK 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0733 460 MobiDBLite consensus disorder prediction 254 283 - -
Lal21g0733 460 PANTHER BNAC03G62830D PROTEIN 30 296 - -
Lal21g0733 460 Pfam Myb-like DNA-binding domain 172 230 - -
Lal21g0733 460 PANTHER MYB PROTEIN-RELATED 30 296 - -
Lal21g0733 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 220 270 IPR017930 -
Lal21g0733 460 ProSiteProfiles Myb-like domain profile. 164 215 IPR001005 -
Lal21g0733 460 SUPERFAMILY Homeodomain-like 166 262 IPR009057 -
Lal21g0733 460 CDD SANT 223 266 IPR001005 -
Lal21g0733 460 Gene3D - 168 220 - -
Lal21g0733 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 219 IPR017930 -
Lal21g0733 460 CDD SANT 172 215 IPR001005 -
Lal21g0733 460 Gene3D - 222 274 - -
Lal21g0733 460 SMART sant 220 268 IPR001005 -
Lal21g0733 460 SMART sant 168 217 IPR001005 -
Lal21g0733 460 ProSiteProfiles Myb-like domain profile. 216 266 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0733 Lal-Chr21 6005654 6007672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0733 47 379 MYB Transcription Factor Family AT4G18770 47.042 3.15e-87 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal21g0733 Myb_DNA-bind_6 2.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0733 K09422 - gmx:100816653 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0733 21 6005654 6007672 Lal21g0733 21 6005654 6007672 ECH
Lal21g0733 21 6005654 6007672 Lal7g0917 7 15631707 15633667 PCT
Lal21g0733 21 6005654 6007672 Lal19g1076 19 14486446 14488482 PCT