Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0716 ATGGGTGGCAATGGGAAACAACATAGGTGGAAATTCTCCATTCTTCGTTCCTCTTCTAAACCCAAGTTGGATCCAAAAACACCTCCCAGCGAATTCATATGTCCAATTTCCGGGTCATTAATGTCCGACCCGGTTATCGTCTCTTCGGGTCAAACCTTCGAACGCGTTGCGGTTCAAGTCTGCACAGATTTAAACTTCTCTCCAATTCTTGGAACCGGGTCCCGACCCGATTTCTCAACTGTTATACCTAATTTAGCGATCAAAACTACAATCCTCAATTGGTGCGATAAATCCCACACCGAGCACCCGCATGCACCGGATTACGCTTCTTTGAAGAGCCTCGTCCGTGAAATGATGGCGGCGGAGGCGCCGCAGGTGGAAGAACAAATTAGGGTTTCCGAGGAGGAGCTTCTGAAGAACGTGGCGGAAAATCCGCCGGTGAATTTCTCACACGCTGCGACTGAGTTAGGCCCCCGAATCAACCACTTCGATTCTGGATCGTCAGAGGAATCGGTGATTATTCGAGAAAGCCATGGCACGCCTTTACCGTTCACTATTCGACCTACGTGCTTGTCTTGCACTTCGTCCTCCTCAATTGAAATCAGTGAGATCGAAATTCAAAACCCTAGCGGCACAATCTTCGAAGAGGAGGAGAAATTGCTAATGAAATTGAGAAGCAGCGAGGTTTTCGAGCAAGAAGAAGGTGTGATTTCACTGAGGAGCATCACGAGGAACAGCGAAGAAGCTAGGTTTTCTCTTTGCACGCCGCGGTTGCTTTTAACGCTGCGTTCGTCGATTCAATCACGATACGCCGTCGTTCAGGTCAACGCAGTTGCTTCGTTAGTCAACCTTTCTCTCGAGAAGCGGAACAAGGTGAAGATCGTGCGGTCAGGATTTGTTCCATTCCTCATCGACGCTTTAAAGGGCGGATCCTCTGAGACGCAGGAACACGCTGCGGGTGCACTCTTTAGTTTAGCGTTAGATGATGATAACAAAATGGCAATTGGTGTTCTCGGCGCGTTGCAGCCACTAATGCACGCGCTGAGATCGGATTCCGAGCGGACTCGGCATGACTCAGCACTCGCGTTGTACAATTTGACTCTAGTTCAAAGCAACCGAGTCAAGCTTGTTAAACTCGCAGCAGTCCCCACTCTTCTCTCAATGGTGAAATCGAAAACAAGTGATTTGGCGAGTCGCGTGTTGTTAATTCTGTGTAACCTTGCGGCTTCCATTGAGGGACAAACGGCGATGCTGGATGCCAATGCGGTGGACTTTTTAGTGGGGATGCTGAAGGGAAACGAGTTGAACTCGGAGTCAACTCGGGAGAATTGCGTGGCGGCGTTGTACGCGCTGAGTCATCGGAGTTTGAGGTTTAAAGGGTTGGCGAAGGAGGCGAGGGCGGTGGAAGTGTTGAAGGAGATTGACAAAACGGGAACGGAGAGGGCAAGTGAGAAGGCTAAGAGGTTGTTGCAGATGATGAGAGCCGTTGGAGAAGAAGAGGGGTTGGAATGTGATGGGACTATGGAATCGGGCGGGTTGACTCGGACTGGGTACCGAGTTGGTTGCGGGAACAATATTATAATTATATTTATCGGAGAATGTGGTCTGCATTGGAAAAATGAGGAAACAATTTTGTTTGGTAGGTGGTTCGCCAAATCCTAG 1662 0.4934 MGGNGKQHRWKFSILRSSSKPKLDPKTPPSEFICPISGSLMSDPVIVSSGQTFERVAVQVCTDLNFSPILGTGSRPDFSTVIPNLAIKTTILNWCDKSHTEHPHAPDYASLKSLVREMMAAEAPQVEEQIRVSEEELLKNVAENPPVNFSHAATELGPRINHFDSGSSEESVIIRESHGTPLPFTIRPTCLSCTSSSSIEISEIEIQNPSGTIFEEEEKLLMKLRSSEVFEQEEGVISLRSITRNSEEARFSLCTPRLLLTLRSSIQSRYAVVQVNAVASLVNLSLEKRNKVKIVRSGFVPFLIDALKGGSSETQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSDSERTRHDSALALYNLTLVQSNRVKLVKLAAVPTLLSMVKSKTSDLASRVLLILCNLAASIEGQTAMLDANAVDFLVGMLKGNELNSESTRENCVAALYALSHRSLRFKGLAKEARAVEVLKEIDKTGTERASEKAKRLLQMMRAVGEEEGLECDGTMESGGLTRTGYRVGCGNNIIIIFIGECGLHWKNEETILFGRWFAKS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0716 553 SUPERFAMILY RING/U-box 14 103 - -
Lal21g0716 553 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 523 - -
Lal21g0716 553 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Lal21g0716 553 PANTHER U BOX DOMAIN-CONTAINING 1 523 - -
Lal21g0716 553 CDD RING-Ubox 33 71 - -
Lal21g0716 553 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 298 335 IPR000225 GO:0005515
Lal21g0716 553 Pfam Armadillo/beta-catenin-like repeat 328 367 IPR000225 GO:0005515
Lal21g0716 553 Pfam Armadillo/beta-catenin-like repeat 289 326 IPR000225 GO:0005515
Lal21g0716 553 Gene3D - 215 495 IPR011989 -
Lal21g0716 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 102 IPR013083 -
Lal21g0716 553 Pfam U-box domain 29 97 IPR003613 GO:0004842|GO:0016567
Lal21g0716 553 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Lal21g0716 553 SUPERFAMILY ARM repeat 219 492 IPR016024 -
Lal21g0716 553 SMART arm_5 328 368 IPR000225 GO:0005515
Lal21g0716 553 SMART arm_5 410 453 IPR000225 GO:0005515
Lal21g0716 553 SMART arm_5 287 327 IPR000225 GO:0005515
Lal21g0716 553 SMART arm_5 369 409 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0716 Lal-Chr21 5760621 5766244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0716 28 527 U-box Gene Family AT5G65200 56.381 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0716 - - aip:107643932 717.613