Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0706 ATGTACTCACAACAACAGCACCATGTTCCCATTCATAATTTGCACCAATCTTCTTTTTCTTCAAACCCATTCTTGTTATCTTTTCCTCAACTTTCTTCATATTCTTCTCTTCATCCTCCTTCCACTACTGACCCTCTTGTAAATTCCATCCTTAACCTTTCAAATCCAACCCCTCTTCCTCCTTCTGCTTCTTATGATCCCAAAACACCGATTTCTCATAACTGGGTCGTTCAACAATCTGATCCCATTGGATATGGTCTTGCTGTTGGATCATCATATGAGACTTCAGCAATGTCTGTCGCATCTAATCACACATGGTCACATCAAGTTTATGCTAACGATACCACAATAATGATGCCTAACCAAAGCAATGTCGCCAATGCAATGAGATGTGAGGTTTGCAAAATTGATTGCAATAGCCGAGATGTTTATGAAAAACACATATCAGGGAAGAAACACAAGAGGAATCTGCAGGTACAGAGTCAAATTAGTAGTATGCAAGGACAAGTGCCAACTGGTGCTGTAGGGAAGGAAATGGAATCCCAGAAACGGAAGGTTTCGAATGGTAGCGCGACCATTGATTCCCTAAAGATTTGCACAATATGCAACATTGTGTGCAATAGTCAAGAAGTATTGAGCAAACATCTAGCTGGGAAAAAGCACTGTGGTCAGGTTGGCTTGATGTCTAATAATGGGATCGGTCCATATATTGCTGCATTTAAGCGTCACGGTGTTGGTCCTTGGAAAAAAGCTCCAAAGAAAATCAAGGTTGCTCAATCTGCATGGTGTGCAGTTTGCAAGATCAATTGTAATAGCAGGGATGTGTATATTGTACACTTATCAGGGAAGAAACACCTGAAGAACTTGGAGAAACTGTCAAAACCTAAAACTGATGCTGGTGTCATAGCAGGAAGTACTTTGCAATATGCAGCGAATTCAATAATTGGGCCACAGGAAAAGCCAGGTACCGATAAACCAAAATCGCATAAGGAAGCTGAAATGGATATTGAGGCAAAGAAACGTAAAGTTGTAGAAGGTGGAGCTTCAGCTGCTGCTGTTAGATTATGCACTCTCTGCAACGTCGTTTGCAACAGCCAGACGGTTTTTGATACTCACCTTACTGGGCATAAACATGCTGCTGCGGTGAAGAAGCAGGCACAATCAACAGGGTCAAGTACTGGATGA 1185 0.4177 MYSQQQHHVPIHNLHQSSFSSNPFLLSFPQLSSYSSLHPPSTTDPLVNSILNLSNPTPLPPSASYDPKTPISHNWVVQQSDPIGYGLAVGSSYETSAMSVASNHTWSHQVYANDTTIMMPNQSNVANAMRCEVCKIDCNSRDVYEKHISGKKHKRNLQVQSQISSMQGQVPTGAVGKEMESQKRKVSNGSATIDSLKICTICNIVCNSQEVLSKHLAGKKHCGQVGLMSNNGIGPYIAAFKRHGVGPWKKAPKKIKVAQSAWCAVCKINCNSRDVYIVHLSGKKHLKNLEKLSKPKTDAGVIAGSTLQYAANSIIGPQEKPGTDKPKSHKEAEMDIEAKKRKVVEGGASAAAVRLCTLCNVVCNSQTVFDTHLTGHKHAAAVKKQAQSTGSSTG 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0706 394 PANTHER ZINC FINGER RNA-BINDING PROTEIN 239 389 - -
Lal21g0706 394 PANTHER ZINC FINGER RNA-BINDING PROTEIN 177 222 - -
Lal21g0706 394 PANTHER ZINC FINGER RNA-BINDING PROTEIN 15 162 - -
Lal21g0706 394 SUPERFAMILY beta-beta-alpha zinc fingers 103 162 IPR036236 -
Lal21g0706 394 SMART ZnF_U1_5 126 160 IPR003604 GO:0003676|GO:0008270
Lal21g0706 394 SMART ZnF_U1_5 258 292 IPR003604 GO:0003676|GO:0008270
Lal21g0706 394 SMART ZnF_U1_5 194 228 IPR003604 GO:0003676|GO:0008270
Lal21g0706 394 SMART ZnF_U1_5 351 385 IPR003604 GO:0003676|GO:0008270
Lal21g0706 394 SUPERFAMILY beta-beta-alpha zinc fingers 258 292 IPR036236 -
Lal21g0706 394 SMART c2h2final6 261 285 IPR013087 -
Lal21g0706 394 SMART c2h2final6 354 376 IPR013087 -
Lal21g0706 394 SMART c2h2final6 197 221 IPR013087 -
Lal21g0706 394 SMART c2h2final6 129 153 IPR013087 -
Lal21g0706 394 SUPERFAMILY beta-beta-alpha zinc fingers 191 224 IPR036236 -
Lal21g0706 394 SUPERFAMILY beta-beta-alpha zinc fingers 353 385 IPR036236 -
Lal21g0706 394 PANTHER - 15 162 - -
Lal21g0706 394 PANTHER - 177 222 - -
Lal21g0706 394 PANTHER - 239 389 - -
Lal21g0706 394 Gene3D Classic Zinc Finger 327 387 - -
Lal21g0706 394 Gene3D Classic Zinc Finger 175 226 - -
Lal21g0706 394 Gene3D Classic Zinc Finger 115 162 - -
Lal21g0706 394 Gene3D Classic Zinc Finger 249 292 - -
Lal21g0706 394 Pfam Zinc-finger of C2H2 type 262 285 - -
Lal21g0706 394 Pfam Zinc-finger of C2H2 type 131 153 - -
Lal21g0706 394 Pfam Zinc-finger of C2H2 type 198 221 - -
Lal21g0706 394 Pfam Zinc-finger of C2H2 type 356 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0706 Lal-Chr21 5668056 5672059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0706 128 380 C2H2 Transcription Factor Family AT5G61190 24.211 1.85e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal21g0706 zf-met 8.9e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0706 - - aprc:113848135 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0706 21 5668056 5672059 Lal21g0706 21 5668056 5672059 ECH