Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0703 ATGGGTTGCGTCCTCGGAAAGCATTCCGGTCACGGAGCTCAGCGCCGTCACCGGAGTACCAGCCAGAGAAACGTTGTTTCTGATAATAATGCCGTTATGGTTCGTGATAGGCAAGGGAATCGACACACCGGCGATTTCCCGGGGAATGTTCCGGCACCGGAGCGCCGGAAACATAGACTCGATCCGTGCGCGGTGAACCAGCAAGGTTGGCCGTCGTGGTTGATGGCTGTCGCTGGTGATGCCATCGGCGATTGGACTCCTCGCCGCGCCAACACGTTCGAGAAGCTTGCTAAGATTGGACAAGGGACTTATAGCAATGTTTATAAGGCAAGGGACCTTGTTAGTGGGAAAATTGTGGCTTTGAAAAAAGTGAGATTTGATAATTTGGAGCCAGAGAGTGTGAAATTCATGGCAAGAGAGATAATTGTTCTAAAGAAGCTTGATCACCCAAATGTTATAAAACTTGAAGGGTTGGTTACTTCTAGAATGTCATGTAGCCTTTACTTGGTCTTTGAATATATGGAACATGATCTTGCAGGTCTTTCAGCTGGCCAAGGTGTTAAGTTCACTGAACCTCAGGTCAAATGCTTTATGAAGCAGTTACTCTCTGGCCTTGGGCATTGCCACAGTCGAGGTGTATTGCACAGAGATATCAAGGGTTCCAATCTGCTTATTGACAATGAAGGGATCCTTAAAATTGCAGATTTTGGATTGAGTACTTTCTTTGATCCAATGCAAAAGCAGTCCATGACAAGCAGAGTAGTGACCCTCTGGTATCGTTCCCCTGAGCTTCTTCTTGGAGCTACACTTTATGGTGTCGGTATTGACCTTTGGAGTGCTGGTTGCATCTTGGCTGAGCTGCTTTATGGGAAGCCGATCATGCCTGGCCGGACAGAGGTTGAACAACTGCACAAAATATTTAAGCTGTGTGGCTCTCCGTCTGAGGAATATTGGAAGAAGTATAAATTACCAAATGCCACAATCTTTAAGCCACAGCAGCCATATAAACGTTGCATCTCAGAAACATTCAAGGATGTTTCTCCATCTTCACTACAGCTAATTGAAAGTTTTCTTGCAATTGATCCTGATGATCGTGGCACTGCCTCAGCTGCTCTACACAGTGAATTCTTTACCACTGAACCCTACGCTTGTGAATCATCGAGTTTACCAAAGTATCCTCCCACCAAAGAATTGGATGTAAAACTGAGGGATGAAGAAGCAAGAAGGCAAAAAGCTCTGAGTGGAAAAGCTCATGCAGTTGATAGTGCGAAAAGAGTCAGAACACGTGAGCATGGTCGGGCCATTCCAGCCCCCGAAGCCAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTTGTGAACAATGCCAAAAGCAAGAGTGAGAAATTTCCTCCTCCTCATCAAGATGGAGCTCTTGGATATCCACAAGATGAATCTCATAAAGGACCTGTTTCATTTGGTGCCACTGACACTTCCTTTGGCTCAGGGATATTTCATTCCAAACCATTAGGACCTGTCAGAAATCATGGTGCTGAACGACCTTATAGTGGGAGGAAAACCAAAATTCAAGGCTCCCAGAAGACCTCATCATGGAAATTTATGGGCACATTCAAGCCATCAACAATTGGCCTTTCAATGGATTTACTGTTTAAGAGAAAATAA 1665 0.4523 MGCVLGKHSGHGAQRRHRSTSQRNVVSDNNAVMVRDRQGNRHTGDFPGNVPAPERRKHRLDPCAVNQQGWPSWLMAVAGDAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVSGKIVALKKVRFDNLEPESVKFMAREIIVLKKLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLSAGQGVKFTEPQVKCFMKQLLSGLGHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLSTFFDPMQKQSMTSRVVTLWYRSPELLLGATLYGVGIDLWSAGCILAELLYGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYKLPNATIFKPQQPYKRCISETFKDVSPSSLQLIESFLAIDPDDRGTASAALHSEFFTTEPYACESSSLPKYPPTKELDVKLRDEEARRQKALSGKAHAVDSAKRVRTREHGRAIPAPEANAEIQTNLDRWRVVNNAKSKSEKFPPPHQDGALGYPQDESHKGPVSFGATDTSFGSGIFHSKPLGPVRNHGAERPYSGRKTKIQGSQKTSSWKFMGTFKPSTIGLSMDLLFKRK 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0703 554 Gene3D Transferase(Phosphotransferase) domain 1 176 417 - -
Lal21g0703 554 Pfam Protein kinase domain 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g0703 554 MobiDBLite consensus disorder prediction 459 482 - -
Lal21g0703 554 SUPERFAMILY Protein kinase-like (PK-like) 87 382 IPR011009 -
Lal21g0703 554 PANTHER CELL DIVISION PROTEIN KINASE 65 535 - -
Lal21g0703 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Lal21g0703 554 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Lal21g0703 554 MobiDBLite consensus disorder prediction 1 23 - -
Lal21g0703 554 MobiDBLite consensus disorder prediction 412 443 - -
Lal21g0703 554 CDD STKc_CDK9_like 93 377 - -
Lal21g0703 554 SMART serkin_6 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g0703 554 Gene3D Phosphorylase Kinase; domain 1 80 175 - -
Lal21g0703 554 MobiDBLite consensus disorder prediction 500 528 - -
Lal21g0703 554 MobiDBLite consensus disorder prediction 412 436 - -
Lal21g0703 554 ProSiteProfiles Protein kinase domain profile. 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g0703 554 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 65 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0703 Lal-Chr21 5615238 5619801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0703 85 432 Core Cell Cycle Gene Families AT5G10270 48.229 7.14e-113 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lal21g0703 Pkinase 2.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0703 K08819 - gmx:100807756 947.192