Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0702 ATGAAAGATTCATCACCACCACTCGCAGACCCTATCACACTTTCTCTCAATCTCCTTTCATCTCTCATTCATCAACAAATCCCCACCGTCCATCACTTTAAAACCAAGTGGTCCCTCGCCCGAGTTCAACTCACTCTTCTCCAAACTCATCTCACCGATTTCAATACCGAGTTTCCTAACTCCACTCACCCTCTCTCCCTTCATCTCCTTCACTCTATATGCTACACCCTACACGACGCCGTTTCACTCGTTCATCACTCTCACTCCCCCACCCTCCAAAACGGCAAGCTCAAAACCCAAAACGACATCGACTCTCTCCTCTCTAAACTTCATTGCCACGTCACCGACTGCGATATCCTACTCCGTAGCGGCGTTCTCAATGAAAACCGAAACGTCGCCGTTTCTACTTCGAAACGCGAAACTGTTAGATCAGAATGTCGAAACCTTATAACCCGATTACAAATCGGGTCGACCGAGTTAAGGAACTCAGCGATGGACTCGTTACTCACTGTTCTCAACGAAGACGATAAGAACGTAACGATAGCGGTGGCGCAGGGTATTGTTCCTGTGCTCGTTCGCTTACTAGATTATTCCCCGTCAAGTTCAGAAATGAAGGAGAAAATCGTGGCTGCGATTTCTAGGGTTTCAACCGTTGACTCAGGTAAGCGCGTTTTGATCGCGGAGGGTTTGTTGCTTCTGAATCATCTGCTTCGGGTTCTTGATTCTGGTACCGGATTTGGTATTGAAAAAGCTTGCATTGCGCTTCAGGCACTGAGTTTCTCGAAGGAGAACGCGAGAACGATCGGGTCGAGAGGTGGAATCTCGTCTCTGTTGGAGATTTGCCAGGCTGGCACTCCCGGTTCACAAGCCTCAGCGGCAGGAGTTCTCAGGAATCTCGCTGCGTTCGCCAAAATTCAAGAAAATCTTGTTGAGGAGAATGCTGTTGTTATTCTGTTAGGACTTGCTGCTTCTGGCACTCCTTTAGCGCAAGAAAATGCGATTAGTTGCTTGTCTTGTTTGATTTCAGAGGCAGAGAGATTGAGGGTTTTGGTTGTTAAAGAAGGTGGAATTGAGATTTTGAAGAATTTTTGGGACTCGGCTAGTTTAACAAACAAGGGTCTCGAAGTCGCGGTGGAGATTTTGAGAAACTTGGCTTTAAGTGCACCTATAGCTGAGGTTCTTATTTCCAAAGGGTTTGTGGCGAGGCTGGTTCGTGTGCTTAATTGTGGAGTGTTGGCGGTGAGAATTGTTGCTGGGAGAGCCGTGTATGCTTTAGGCTTGAGTGGCGGCACAAAGGCTAAGAAGGAAATGGGGGAATGTGGCTGTATTATGCCTTTGATTAAGATGTTGGATGGGAAAGCTTTTGAAGAGAAAGAAGTAGCGATGATGGCTTTGTCTGTGCTCTTGTTGCATGCGGAAAATCGGAGGATTTTTCGGAAGGATGAGAAGGGTGTAGTAAGTGTAGTGCAGTTACTGAATCCTTCACTGCAGGGTTTGGATAAGAAGTACCCTGTTTCATTGCTGGCATTGCTGGTGCATTCCAAGAGTTGTAGGAAGCAAATGGTGGCAGCTGGGGCTTGTGTGTTTACACAGAAGCTCGCTGAGATGGATGTCGAGGGATCTAAGAAATTGTTGGAGAGCCTTGGTCGTGCGAGGGACAGAAGATTTTTAACCTCATGCAACTATGGTCTAGCACCACCAACGATGAAGGGTGAAGGGGTTTTGATGATTTTACTTTGGCCAATAATTCTTCTTACCTAG 1761 0.4685 MKDSSPPLADPITLSLNLLSSLIHQQIPTVHHFKTKWSLARVQLTLLQTHLTDFNTEFPNSTHPLSLHLLHSICYTLHDAVSLVHHSHSPTLQNGKLKTQNDIDSLLSKLHCHVTDCDILLRSGVLNENRNVAVSTSKRETVRSECRNLITRLQIGSTELRNSAMDSLLTVLNEDDKNVTIAVAQGIVPVLVRLLDYSPSSSEMKEKIVAAISRVSTVDSGKRVLIAEGLLLLNHLLRVLDSGTGFGIEKACIALQALSFSKENARTIGSRGGISSLLEICQAGTPGSQASAAGVLRNLAAFAKIQENLVEENAVVILLGLAASGTPLAQENAISCLSCLISEAERLRVLVVKEGGIEILKNFWDSASLTNKGLEVAVEILRNLALSAPIAEVLISKGFVARLVRVLNCGVLAVRIVAGRAVYALGLSGGTKAKKEMGECGCIMPLIKMLDGKAFEEKEVAMMALSVLLLHAENRRIFRKDEKGVVSVVQLLNPSLQGLDKKYPVSLLALLVHSKSCRKQMVAAGACVFTQKLAEMDVEGSKKLLESLGRARDRRFLTSCNYGLAPPTMKGEGVLMILLWPIILLT 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0702 586 Gene3D - 369 551 IPR011989 -
Lal21g0702 586 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 186 230 IPR000225 GO:0005515
Lal21g0702 586 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 11 550 - -
Lal21g0702 586 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 11 550 - -
Lal21g0702 586 Gene3D - 135 368 IPR011989 -
Lal21g0702 586 SUPERFAMILY ARM repeat 145 514 IPR016024 -
Lal21g0702 586 SMART arm_5 175 217 IPR000225 GO:0005515
Lal21g0702 586 SMART arm_5 302 342 IPR000225 GO:0005515
Lal21g0702 586 SMART arm_5 261 301 IPR000225 GO:0005515
Lal21g0702 586 SMART arm_5 387 427 IPR000225 GO:0005515
Lal21g0702 586 SMART arm_5 343 386 IPR000225 GO:0005515
Lal21g0702 586 SMART arm_5 430 470 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0702 Lal-Chr21 5610349 5614308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0702 147 302 U-box Gene Family AT1G23030 28.846 2.62e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0702 - - gmx:100807228 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0693 4 5524341 5526023 Lal21g0702 21 5610349 5614308 ECH
Lal21g0702 21 5610349 5614308 Lal21g0702 21 5610349 5614308 ECH