Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0697 ATGATGTCTAGAACTAACAGTATTTCTTGGATGGATCATACCAACAACATAGAAGATCACCAAGAGTGTCATTCACCTTCATGGCCTAGAAACACCAAAATATTAAACACAAACACTTGTGGTTTTGTTGAAACAAGAGATAATGAATTAGGCTCTATCTGTGGCTTCAAATCACCCATGATGGAGGTTGTTGATGAGGAATGGTACATAGCTAACAACAGCATTCAAAACCACCCTGAAGATATGATTAGGGACATGACCTTTTCTCCAAACTTTGCTGACCCATCAGAAAACCTTTTGCTACACCAAAATGTTCCTGTGGACTCTTCCTCTTCTTGTTCTCCATCTTCTTCTATGTTCAACAACCTTGACCCTTCACAAGTGCACCAATATTTTCTACCTTCCAACAATACCAAACTCAACCCTTTATCTTCTCTACTCAACAACAACAACAACCCTTTTGAGATGGGTTGTGAGGTTGGGTTTTTGGAGCCTCAAGCTTCAACAACTTCACCATCATTGCTGAACAGAACTTCTTCTTCACTCTTGGGTGGCTTCAATGAATTCAACACTAAGAATCACTTAGCCCTTCCTAACTTGGGCTCATCAGCTACAAGCATCACAGAATTGCACCAAAACACAACCAAATTTGCAGGTTTTCAGAACAACTTTGAAGAGGGTTTTGAAGGAAACAAGGCAATGTTTCTGAACAGGTCTAAGATTTTAAGACCCCTTGATTCTTTACCTCCATCTGGAGCACAACCAACTTTGTTTCAAAAGAGAGCAGCACTTAGAAAAAACTTGGGATCAGAAAGTGGTGTTGGTGTTGATGTGGCTAGTTCTGATAGGAAGATGATGATGAAGATGAGTACTAGTGTGGAATTAGATGTGAAAGATGGAAGCTTTGATGGGTCTATATTGAACTATGACTCTGATGATTTGACTGAGACTAATAATAACAATAATAAGGTGGAAGAGAATAATGGGAGGAATGGTGGAAATAGTTCTAATGGAAACAGCACTGTGACTGGTGTTGTGGATCAGAAAGGGAAGAAGAAAGGAATGCCTGCTAAGAATTTGATGGCGGAACGCCGCCGGAGGAAGAAGCTTAATGATAGACTCTATATGTTGAGGTCTGCTGTTCCAAATATTAGCAAAATGGACAGGGCTTCTATACTAGGGGATGCAATTGAGTACTTGAAGGAACTTCTGCAAAGGATCAATGACCTTCATAATGAATTGGAATCAACACCTTCTGGCTCTTCACTCACTCCTGTCTCAACCTTCCATCCTTTGACACCTACTCCACCCGCACTTCCGAGCCGAATTAAAGAAGAACTATGCCCCAGCTCTCTGCCAAGTCCCAATGGCCAACCTGCCAGGGTCGAGGTTCGATTGCGCGAAGGAAGAGCTGTAAATATCCACATGTTTTGTTCGCGCAAACCCGGTCTCTTGCTCTCAACCATGAGGGCTTTGGATAATATGGGATTAGACATTCAGCAGGCTGTTATCAGCTGTTTCAACGGTTTCGCTATGGATATTTTTCGAGCCGAGCAACTCGTAGAAGGACAGGATGTTCATCCGGATCAAATCAAAGCAGTACTATTGGATTCAGCTGGCTTCAATGGCATGATCTAG 1638 0.42 MMSRTNSISWMDHTNNIEDHQECHSPSWPRNTKILNTNTCGFVETRDNELGSICGFKSPMMEVVDEEWYIANNSIQNHPEDMIRDMTFSPNFADPSENLLLHQNVPVDSSSSCSPSSSMFNNLDPSQVHQYFLPSNNTKLNPLSSLLNNNNNPFEMGCEVGFLEPQASTTSPSLLNRTSSSLLGGFNEFNTKNHLALPNLGSSATSITELHQNTTKFAGFQNNFEEGFEGNKAMFLNRSKILRPLDSLPPSGAQPTLFQKRAALRKNLGSESGVGVDVASSDRKMMMKMSTSVELDVKDGSFDGSILNYDSDDLTETNNNNNKVEENNGRNGGNSSNGNSTVTGVVDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSAVPNISKMDRASILGDAIEYLKELLQRINDLHNELESTPSGSSLTPVSTFHPLTPTPPALPSRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCSRKPGLLLSTMRALDNMGLDIQQAVISCFNGFAMDIFRAEQLVEGQDVHPDQIKAVLLDSAGFNGMI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0697 545 SMART finulus 360 409 IPR011598 GO:0046983
Lal21g0697 545 PANTHER BHLH TRANSCRIPTIONAL FACTOR 110 545 - -
Lal21g0697 545 Pfam Helix-loop-helix DNA-binding domain 361 403 IPR011598 GO:0046983
Lal21g0697 545 Gene3D - 347 418 IPR036638 GO:0046983
Lal21g0697 545 Coils Coil 393 417 - -
Lal21g0697 545 MobiDBLite consensus disorder prediction 309 346 - -
Lal21g0697 545 CDD bHLH_AtAMS_like 357 422 - -
Lal21g0697 545 MobiDBLite consensus disorder prediction 309 355 - -
Lal21g0697 545 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 357 421 IPR036638 GO:0046983
Lal21g0697 545 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 354 403 IPR011598 GO:0046983
Lal21g0697 545 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 110 545 - -
Lal21g0697 545 CDD ACT_UUR-ACR-like 474 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0697 Lal-Chr21 5537318 5541197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0697 46 524 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 49.696 9.10e-121 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal21g0697 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0697 - - jre:109003084 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0687 4 5390915 5393979 Lal21g0697 21 5537318 5541197 ECH
Lal21g0697 21 5537318 5541197 Lal21g0697 21 5537318 5541197 ECH
Lal21g0697 21 5537318 5541197 Lal4g0687 4 5390915 5393979 LSH
Lal19g1004 19 13911276 13914610 Lal21g0697 21 5537318 5541197 PCT
Lal21g0697 21 5537318 5541197 Lal19g1004 19 13911276 13914610 PCT