Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0695 ATGTATTTCCAGAAACTCCAAGACTCACCTATGTTCCGGCAACAGCTGCAGATAATGGAAGAAAGTTCAGAAGCGTTACGCTCCAGATGTTGGAAGTTCTATAAAGGTTGTCGAAAATACACGGAAGGACTAGGAGAGGCATATGATGGAGATATAGCATTTGCAAATGCAGTTGAAAATTTTGTAGGAGGGCATAGTGATCCTTTATTTGTAACTTTGGGAGGACCTGTTATGGCCAAATTCACTATTGCTTTGAGAGAAATCAGTACACACAAGGAACTTCTTCGGTCAGAGGTGGAGCACATGCTGAATGACAGATTATTGAACATTCTAAATGTTGAAATCCTTGATGTCAAGGAAGCTCGAAGGCGTTTTGTCAAATCCTCACTTGCATATGACCAGGCGCGTGAAAAATTTATGTCATTGAGAAAAGGCACCAAGTTTGATACAGCCGCTGTCATAGAAGAGGAATTGCACAATGCAAGAAACTCATACGAGGAAGCCCGTTTCAATCTGGTCAGTGCTCTTCATAATATTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGTCTGTCACTGCAGTTATGGATGCTCATCTTCGTGTTCCCGATTTATTGAGTGAATGGGAGATTTCCTTCATTTTATCTGCTATGCTTCAGGTTTTGGCTTATGCACAAAAGTCAAGAGAAAGTGCCAATGAGGAGCAGATTTCTCTTTGTGAAAGAATGGTACAGTACAAACAACTAGCCCGTGAAGAAAGTAAGTTGTCCTCGAATGGTCCTTATAGTTCACCAAGTGGAGACAGTATGCAACATTTTTCGAGGATATCGAATAAAGTGGTAGATGCAGTAACAGAATCTTCTGCAAATGGAAAGGTTCAAATCATTAGACAAGGCTATCTTTCAAAACGATCCTCAAATTTGAGGGGTGACTGGAAGAGAAGGTACTTTGTTCTTGATAGTCGTGGAATGCTTTACTACTATCGTAAACCATTGATTGGGTTACAAGGAGGCAATCAACCATGTGTACCGATGAATTATGCCACTGAAAATAGTTCGGGGATTCTGACTCGGTTGCTTTCTTCGCAATACCATGGAGTTATCCCGGATGAGAGATCTGTTGCACGTCATACAGTGAACCTGTTGACATCAACAATCAAGATTGATTCTGAGCAGTCAGATTTAAGATTCTGCTTCAGGATTATTTCACCATCAAAGATTTATACATTGCAGGCAGAAAATGCACTGGACCAGATGGATTGGATGGAAAAGATAACTGGAGTAATTGCCTCCTTGTTGAGCGCACAGACATTGGAAACGCCTCGCTCAACTGACTCAGAAGGCAGTGAACTTTACTCTGCCAGCAAGCTTGAGTTCTTACTAAGTTCTCCAGATGATGATTGGGCAGTGAGTATGGATTTAGCATCGAAGAACTTCACCCCGAATAGTTCACCGATAGGCTTGAAAGGGAATAAACAAAATATGAAAGGAGAAAAGCCAATTGATGTTCTTAGAAAGGTTAGCGGCAATGACAAATGTGCTGATTGTGGTAAACCTAAACCTGACTGGGCATCCTTGAACCTCGGCATCCTTATATGCATTGAATGTTCGGGTGTTCATCGTAATCTTGGTGTACATATGTCAAAAGTAAGGTCACTGACACTTGATGTGAAAGTCTGGGATTCCTCCATATTAACCATGTTTCAGTCACTAGGAAATATGTTCACAAACTCAGTTTGGGAAGAGCTTTTGCATTCAACAAATCCTTCAATAACTGATGACACACCTGTTTGTTCACCCAAGGCCAGCACAAACAAGTTATTTCATGCAAGAAAACCAAAACATGATGATCCTATTTCACTAAAGGAGAGGTTCATTCATGCAAAGTACTCTGAGAAAGTCTTTGTTCGCCGGGTGACAAAAAATCATCGTATCCCTTCAGTGGAACAACAGGTGTGGGAAAGCATATGCACCAACGACCCGAAAGCAGTGTACCGACATATTGTCAGTTCAGATGTAGATGTCAATGCTATCAATGGACAAGCATTAGATGGCAATTCTCTCAACATGACTTCTTCAACTAATCCAAACATAGCATCTCAAAGTACACATCAATTAATGGAGGACATACAAGAGGGTTCTAGTGTGCTTCACCTGGCATGCCTTACTTGTGATGCCGGAATGGTGGAGCTACTCCTACAGTATGGGGCAGATGTAAATGCTATTGATTCAAGAGGTCGGACACCACTACATTACTGCATTTTGAGAGGGAAGATTGCAGCTGCAAAAGTGCTTATTACAAGAGGGGCCAATCCACATGTGGTAGATAAAGAAGGCAACACTCCTCTCAAGCTTGCATCTGAACCCAGCACTGTAGGCAATGAAATTGATTCTCTCTTAACAAGCACCACATGA 2412 0.4154 MYFQKLQDSPMFRQQLQIMEESSEALRSRCWKFYKGCRKYTEGLGEAYDGDIAFANAVENFVGGHSDPLFVTLGGPVMAKFTIALREISTHKELLRSEVEHMLNDRLLNILNVEILDVKEARRRFVKSSLAYDQAREKFMSLRKGTKFDTAAVIEEELHNARNSYEEARFNLVSALHNIEAKKRFEFLESVTAVMDAHLRVPDLLSEWEISFILSAMLQVLAYAQKSRESANEEQISLCERMVQYKQLAREESKLSSNGPYSSPSGDSMQHFSRISNKVVDAVTESSANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPLIGLQGGNQPCVPMNYATENSSGILTRLLSSQYHGVIPDERSVARHTVNLLTSTIKIDSEQSDLRFCFRIISPSKIYTLQAENALDQMDWMEKITGVIASLLSAQTLETPRSTDSEGSELYSASKLEFLLSSPDDDWAVSMDLASKNFTPNSSPIGLKGNKQNMKGEKPIDVLRKVSGNDKCADCGKPKPDWASLNLGILICIECSGVHRNLGVHMSKVRSLTLDVKVWDSSILTMFQSLGNMFTNSVWEELLHSTNPSITDDTPVCSPKASTNKLFHARKPKHDDPISLKERFIHAKYSEKVFVRRVTKNHRIPSVEQQVWESICTNDPKAVYRHIVSSDVDVNAINGQALDGNSLNMTSSTNPNIASQSTHQLMEDIQEGSSVLHLACLTCDAGMVELLLQYGADVNAIDSRGRTPLHYCILRGKIAAAKVLITRGANPHVVDKEGNTPLKLASEPSTVGNEIDSLLTSTT 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0695 803 SUPERFAMILY BAR/IMD domain-like 6 316 IPR027267 -
Lal21g0695 803 ProSiteProfiles Ankyrin repeat region circular profile. 744 776 - -
Lal21g0695 803 ProSiteProfiles Ankyrin repeat region circular profile. 711 742 - -
Lal21g0695 803 Coils Coil 151 171 - -
Lal21g0695 803 CDD ArfGap 500 629 - -
Lal21g0695 803 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 801 - -
Lal21g0695 803 PANTHER CENTAURIN/ARF 1 801 IPR045258 GO:0005096
Lal21g0695 803 SMART arf_gap_3 497 642 IPR001164 GO:0005096
Lal21g0695 803 ProSiteProfiles Ankyrin repeat profile. 711 743 IPR002110 GO:0005515
Lal21g0695 803 Gene3D - 686 801 IPR036770 -
Lal21g0695 803 PRINTS HIV Rev interacting protein signature 509 528 IPR001164 GO:0005096
Lal21g0695 803 PRINTS HIV Rev interacting protein signature 528 545 IPR001164 GO:0005096
Lal21g0695 803 PRINTS HIV Rev interacting protein signature 551 572 IPR001164 GO:0005096
Lal21g0695 803 Pfam PH domain 295 428 IPR001849 -
Lal21g0695 803 SMART 5bar 2 223 IPR004148 GO:0005515|GO:0005737
Lal21g0695 803 ProSiteProfiles ARF GTPase-activating proteins domain profile. 497 642 IPR001164 GO:0005096
Lal21g0695 803 Pfam Putative GTPase activating protein for Arf 500 636 IPR001164 GO:0005096
Lal21g0695 803 Gene3D Arfaptin homology (AH) domain/BAR domain 3 251 IPR027267 -
Lal21g0695 803 Pfam BAR domain of APPL family 6 199 - -
Lal21g0695 803 ProSiteProfiles PH domain profile. 293 429 IPR001849 -
Lal21g0695 803 Gene3D Arf GTPase activating protein 483 643 IPR038508 -
Lal21g0695 803 Gene3D - 286 444 IPR011993 -
Lal21g0695 803 SUPERFAMILY ArfGap/RecO-like zinc finger 498 637 IPR037278 -
Lal21g0695 803 SMART ANK_2a 744 773 IPR002110 GO:0005515
Lal21g0695 803 SMART ANK_2a 711 740 IPR002110 GO:0005515
Lal21g0695 803 SMART PH_update 294 431 IPR001849 -
Lal21g0695 803 Pfam Ankyrin repeats (many copies) 713 765 IPR002110 GO:0005515
Lal21g0695 803 SUPERFAMILY PH domain-like 217 428 - -
Lal21g0695 803 CDD PH_ACAP 296 433 - -
Lal21g0695 803 CDD BAR_SFC_plant 15 209 IPR035670 -
Lal21g0695 803 SUPERFAMILY Ankyrin repeat 658 787 IPR036770 -
Lal21g0695 803 ProSiteProfiles Ankyrin repeat profile. 744 776 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0695 Lal-Chr21 5504403 5515813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0695 496 636 C2H2 Transcription Factor Family AT4G21160 37.324 1.94e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0695 K12489 - gmx:100797073 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0817 17 5994251 6003753 Lal21g0695 21 5504403 5515813 LSH
Lal19g1002 19 13879876 13890772 Lal21g0695 21 5504403 5515813 PCT
Lal21g0695 21 5504403 5515813 Lal19g1002 19 13879876 13890772 PCT