Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0682 ATGGGTAGATCTCCTTGTTGTGAAAAAGAACACACAAACAAAGGTGCTTGGACCAAAGAAGAAGATCAACGCCTTATTAACTATATCAAGATTCATGGTGAAGGATGTTGGAGATCTCTTCCTAAAGCTGCTGGGTTGCTTAGATGTGGTAAGAGTTGCAGACTCAGATGGATAAATTATCTCAGACCTGATCTCAAGAGAGGAAACTTCACTGAAGAAGAGGATGAACTTATCATTAACCTTCATAGCTTACTTGGAAACAAATGGTCACTAATAGCTGCAAGGTTACCGGGGAGAACAGATAATGAGATCAAGAACTATTGGAATACTCACATCAAGAGAAAACTCTACAGCCGTGGAATCGACCCACAAACCCATCGACCACTTAACGCTGCCGCTGCTGCTGCCGCCACCACCACAACTCCACCTGATAACACTATTATCACCACCACAAGCAACAAGAAAATGAACAAAGATAGCATTAGCAACATCAACCATGACATTAACAACATAAATTTTCAGTTGGTTAATGGTACTGAAGATTCAAATAGCAGCAGTGGTGTTACCACAGATGAATTAGCTTTTCATCCTCATAATCAACTCAACTTAGACCTTTCTATTGGCCTTCCTTCTAATCACACCAAAGCTCCTTCTTCTTCTACCATGAACCCAGAAAACAACAAAAAGAAGTTGAAACAAGAACCTCATGTTTTGTACCAGTGGTATAATGGGAACAACAACGTTGCGGGTGTGTGCCTTTGTTACGGTCTAGGGTTTCAAAGCAACAAACAAACGTGTAGTTGCAAAGCCATGGAAACTAGTACTACGACAGTTACTGCTAAAACTGCCTCAGATAATCATGATCTGTATAGATTTTACCCACCCATGAGTTTTTAG 897 0.4058 MGRSPCCEKEHTNKGAWTKEEDQRLINYIKIHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNAAAAAAATTTTPPDNTIITTTSNKKMNKDSISNINHDINNINFQLVNGTEDSNSSSGVTTDELAFHPHNQLNLDLSIGLPSNHTKAPSSSTMNPENNKKKLKQEPHVLYQWYNGNNNVAGVCLCYGLGFQSNKQTCSCKAMETSTTTVTAKTASDNHDLYRFYPPMSF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0682 298 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal21g0682 298 PANTHER TRANSCRIPTION FACTOR MYB7 1 247 - -
Lal21g0682 298 CDD SANT 69 112 IPR001005 -
Lal21g0682 298 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal21g0682 298 CDD SANT 16 61 IPR001005 -
Lal21g0682 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal21g0682 298 Gene3D - 14 66 - -
Lal21g0682 298 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 247 - -
Lal21g0682 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal21g0682 298 SMART sant 13 63 IPR001005 -
Lal21g0682 298 SMART sant 66 114 IPR001005 -
Lal21g0682 298 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal21g0682 298 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lal21g0682 298 Gene3D - 68 137 - -
Lal21g0682 298 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0682 Lal-Chr21 5309627 5311383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0682 1 211 MYB Transcription Factor Family AT4G09460 61.086 8.52e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal21g0682 Myb_DNA-binding 9.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0682 K09422 - gmx:100808083 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0682 21 5309627 5311383 Lal21g0682 21 5309627 5311383 ECH
Lal17g0793 17 5805369 5806910 Lal21g0682 21 5309627 5311383 LSH
Lal21g0682 21 5309627 5311383 Lal4g0660 4 5025379 5026935 LSH