LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal21g0671	ATGAAGTTAATCGGCGACGACAGCGGCGGCGTCGACGCCCGGAAGAAAGTGTTGATCGGAGTTAAGTTAGACGAACGGAGCATGGAATTGCTGACGTGGACACTTCTTAATGTTGCCGTTCCCGGCGACCTTATCATTGTGCTTCACGTTATTGAAACCATCTCTGCAGGAACAGCATCGGTACTTTCTATACTCAAACGTTTCGATTCCGTTATCTCCACTTACAAAGGCTTCTGCAATTTACAGCAGGTTGATCTGAGGCTTAAACTGTGTAGAGGTGTTTCACCTCGGAAGGTTATAGTACAAGAGGCTAACTCATTTGGTGTTTCGGTAGTTATTCTTGGAATTTCAAAAACGCACCACACGATTCGTTCTTATTCATTGATTGCCAAGTATTGTGCAAAGAAATTGCTTAAGTGTGTTTCTGTTTTCTCTGTTGATAATGGCAAAATTGCTTTCCAAAGAGAAGCTTCTAGAAGTTGCAGTTGTCAAGAAAAAATACATGAAGGCCAAAGCAGTTCACCGAATTTGTTGGTATCTTGTAAGAAGAAAACTTTGACGAATTGTGAAAGTTTTGAGAAAAGGTTGTCTGATGACGATCTTGTAAAGGAAAATTCATTGGCTTTGGTACCATTTCTAAAACTTGATAATAGTGATCCTCTTAGTTATTCAATTATGGTGAGTAATTCAGACCAGTTGAAATGTGGTTGTTCAATAATTCACCAAGTGCTTCACCGAAAGTGTTCACTTTCAAAGTCACCATGGAAGAGAAGATTTGTTTTTCAACCTGCATTGCGACGGCTCAACTGGAATTTGTCAGCTGTAGTCCATCCAGATCATAAACAGACTAATGATGACAAGAATAATTGTTCCACCCATTATGGGGAGAGTGGTGCTATTCTTCCATTTGGATCTAATGCTAATTTTCCTCTTCCTTCGATATGTGGTGAAGTGACTAGTCTTCCTGAAGAATTGTTGGGCTTACAGGAGAACTACTCATCTTTATGCAGAATCTATAGTTTACAGGAACTTGTATTTGCAACCGCTAACTTCTCACCCGTAAATTTGGTTGGAAAAGGTGGTAGTAGTTATGTTTACAGAGGATGTCTACCGGATGGCAAGGAATTGGCTGTGAAAATTTTAAAGCCATCTGAAGATGTGGTAAAAGAGTTTGTTCAGGAAATTGAGATCATTACAACTTTGCATCACAAGAACATAATACCTCTATCTGGCTTTTGTTTTGAGAGAAACCATTTACTACTGGTATATAAATTTTTATCAAGGGGAAGCCTAGAAGAAAACCTTCATGGTAATAAGAAGGACTGCAATGCACTTGGTTGGCAAGAGAGGTACCGGGTGGCTGTCGGTGTAGCTGAGGCATTGAATTATCTGCATAATGGCTGTGCAAAGGCTGTGATCCATAGGGATGTTAAATCTTCCAATATCCTTCTTTCGGCTGATTTTGAGCCTCAGCTCTCAGATTTTGGACTGGCTAGTTGGAGTTCTTCTTCTTCTTCTTCCAATATTACTTGTCTTGATGTAGCCGGAACCTTTGGATACCTAGCTCCTGAATACTTGATGCACGGTAAAGTGACTGACAGAATTGATGTATATGCTTTTGGTGTTGTACTCCTTGAGCTTCTCTCAAATAGGAAGCCCATTAACAATGACTGCCCAAAGGGCCAGGAGAGCCTTGTTATCTGGGCAACTCCAATTTTGAAAGATGGGAAGCTTTCCCAGTTGCTTGATCCAAGCTTAGGCATTGAATATGACCATGGCCAGATTCAAAGGATGGTTTTGGCTGCTACTCTCTGCATTAGACGAGCACCTAGATCGCGACCTGAAATTAGCCTTATACTAAAACTTTTACAAGGTGACGAAGAAGTGACAAGATGGGCAGAACAAGAAATTAGTGCACCACAAGATTTCGATGGAGCTGATGGGGAACCGAGTGCGATTAATATCCAGTCCCATCTGAACCTTGCTTTGCTGGACTTGGATGATGATGATGCAGTTTCTATCAGTAGCGCTGAGCAGAATGTCTCATTGGAGAACTATTTGCTGGGAAGGTGCAATGGCTCTTCAAGTTCTGTCTAA	2097	0.412	MKLIGDDSGGVDARKKVLIGVKLDERSMELLTWTLLNVAVPGDLIIVLHVIETISAGTASVLSILKRFDSVISTYKGFCNLQQVDLRLKLCRGVSPRKVIVQEANSFGVSVVILGISKTHHTIRSYSLIAKYCAKKLLKCVSVFSVDNGKIAFQREASRSCSCQEKIHEGQSSSPNLLVSCKKKTLTNCESFEKRLSDDDLVKENSLALVPFLKLDNSDPLSYSIMVSNSDQLKCGCSIIHQVLHRKCSLSKSPWKRRFVFQPALRRLNWNLSAVVHPDHKQTNDDKNNCSTHYGESGAILPFGSNANFPLPSICGEVTSLPEELLGLQENYSSLCRIYSLQELVFATANFSPVNLVGKGGSSYVYRGCLPDGKELAVKILKPSEDVVKEFVQEIEIITTLHHKNIIPLSGFCFERNHLLLVYKFLSRGSLEENLHGNKKDCNALGWQERYRVAVGVAEALNYLHNGCAKAVIHRDVKSSNILLSADFEPQLSDFGLASWSSSSSSSNITCLDVAGTFGYLAPEYLMHGKVTDRIDVYAFGVVLLELLSNRKPINNDCPKGQESLVIWATPILKDGKLSQLLDPSLGIEYDHGQIQRMVLAATLCIRRAPRSRPEISLILKLLQGDEEVTRWAEQEISAPQDFDGADGEPSAINIQSHLNLALLDLDDDDAVSISSAEQNVSLENYLLGRCNGSSSSV	698

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal21g0671	698	Pfam	Protein kinase domain	354	563	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lal21g0671	698	ProSiteProfiles	Protein kinase domain profile.	351	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lal21g0671	698	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	472	484	IPR008271	GO:0004672\|GO:0006468
Lal21g0671	698	Gene3D	Transferase(Phosphotransferase) domain 1	426	640	-	-
Lal21g0671	698	Gene3D	HUPs	14	140	IPR014729	-
Lal21g0671	698	PANTHER	OS01G0253100 PROTEIN	15	184	IPR045271	GO:0004714\|GO:0006468
Lal21g0671	698	PANTHER	OS01G0253100 PROTEIN	213	691	IPR045271	GO:0004714\|GO:0006468
Lal21g0671	698	SUPERFAMILY	Protein kinase-like (PK-like)	331	623	IPR011009	-
Lal21g0671	698	SMART	serkin_6	351	633	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lal21g0671	698	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	15	117	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal21g0671	Lal-Chr21	5215775	5219619	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal21g0671	339	630	Trihelix Transcription Factor Family	AT5G38560	42.088	1.12e-72	247

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Lal21g0671		Pkinase	5.6e-41	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal21g0671	-		-	gmx:100815722	885.945

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lal21g0671	21	5215775	5219619	Lal21g0671	21	5215775	5219619	ECH
Lal1g0168	1	1063443	1066113	Lal21g0671	21	5215775	5219619	ECH
Lal9g0123	9	812890	819414	Lal21g0671	21	5215775	5219619	ECH

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