Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0670 ATGGCTTTTGAAGAGTGCAATTTTGATATTGGAGAGTTTGAACACCTTATTTTTGACAACATTGAAAGTGGTAGTTCTGATAATAATTTGAGTGAATTTGATAGCCAACTTTGTGTCCCACAAGACCCAATTGAAGAATTGGAAAAGTTCCCATATTTCCCTAATGATTTTATATCATTGAATGAAGTGGAATGGGTAATGCCAGAGATACAACAAAACAAGGACAAAGAAGAGTTAAAAGCAAAGCAACAAAACAAAGAGGTTGTTGAATTCTTGGTGCATGGTTTTATAGGGAAGAAAGCAAGGACAAAAAATTATCATAAGCCAAAGTGTGTAGTGAAATGGGTGAAGAAAAGGTGTAGTCATTGTGAAGCAGAAGAGACACCGCAATGGAGGAATGGACCATTGGGACCTAAGACATTGTGCAATGCTTGTGGAGTTCGATACAAATCAGGTAGATTGGTTTCAGATTATCGACCAGCAAATAGTCCTACATTTGATAGTTCTAAACATTCTAATTATCATAGAAATATTATCAAGAGGAGGAGATGCTAA 555 0.3586 MAFEECNFDIGEFEHLIFDNIESGSSDNNLSEFDSQLCVPQDPIEELEKFPYFPNDFISLNEVEWVMPEIQQNKDKEELKAKQQNKEVVEFLVHGFIGKKARTKNYHKPKCVVKWVKKRCSHCEAEETPQWRNGPLGPKTLCNACGVRYKSGRLVSDYRPANSPTFDSSKHSNYHRNIIKRRRC 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0670 184 Coils Coil 67 87 - -
Lal21g0670 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 116 174 - -
Lal21g0670 184 Gene3D - 114 183 IPR013088 GO:0006355|GO:0008270
Lal21g0670 184 ProSiteProfiles GATA-type zinc finger domain profile. 118 150 IPR000679 GO:0006355|GO:0043565
Lal21g0670 184 CDD ZnF_GATA 119 170 IPR000679 GO:0006355|GO:0043565
Lal21g0670 184 Pfam GATA zinc finger 120 153 IPR000679 GO:0006355|GO:0043565
Lal21g0670 184 PANTHER GATA TRANSCRIPTION FACTOR 28 183 - -
Lal21g0670 184 PANTHER GATA TRANSCRIPTION FACTOR 4-LIKE 28 183 - -
Lal21g0670 184 SMART GATA_3 114 168 IPR000679 GO:0006355|GO:0043565
Lal21g0670 184 ProSitePatterns GATA-type zinc finger domain. 120 145 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0670 Lal-Chr21 5199990 5200544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0670 25 183 C2C2-Gata Transcription Factor Family AT3G60530 40.000 6.57e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal21g0670 GATA 1.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0670 - - lang:109342342 361.303