Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0668 ATGAACAAAGGTGGCCGGAAACGCCCTCCACCGCCGTCGCAGCCTTCGCCGTCCAACCCTCCGAAGAATCAAGCCTTGAACCAAGAAGATGATTTCGTCGACGAAGACGTCTTCCTCAACGAAACCCTCATCTCCGAAGACGAAGAATCTCTCATCCTCCGCGACATCGAGCACCGCCAGGCCCTCGCTGATCGCCTCGCCAAGTGGACCCGCCCTCCTCTCTCACCTGATTACCTCGGTCAATCTCGCAGCGTCCTTTTTCAGCAGTTGGAGATGGATTATGTGATTGGAGAAAGTCATAAGGAGTTGCTACCGAATTCATCTGGATCGGCTGCCATTATTAGAATATTTGGAGTTACAAAGGAAGGACACAGTGTTTGCTGCAATGTTCATGGGTTCGAACCATATTTCTACATCAGCTGCCCTCCGGGAATGCGTCCAGATGATATCTCCCATTTTCATCAGATTCTTGAGGCAAGGATGAGGGAGGCAAATAGAAACAGTAATGTGGGAAAATTGGTTCGCCGTATTGAACTGGTGCAAAAAAGGAGTATTATGTACTATCAGCAGTCTGATTCCCATCCCTTTCTCAAAATTGTAGTTGCACTCCCAACAATGGTTGCCAGCTGCCGTGGTATTCTTGATAGAGGTATTCAGCTTGATGGTCTCGGCATGAAGACCTTCATGACTTATGAAAGCAATGTACTTTTCACCCTTCGTTTCATGATTGATTGCAACATTGTTGGTGGGAATTGGATTGAGCTTCTAGCTGGAAAATATAAGAAGACATCAAAAACATTGACTTATTGTCAGTTAGAGTTTGATTGCCTGTATTCAGAATTGATTAGTCACACCCCAGAAGGGGAATATTCGAAGATGGCTCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCCAGCCATGATCCTGTTATCCAGATTGCTAATCTAGTTACTCTGCAAGGAGAAGATCAGCCGTTAATTCGTAATGTTATGACGCTTAAATCATGTTCCCCAATAGTCGGGGTTGATGTCATGTCATTTGATACAGAAAGAGAAGTCCTTCTAGCTTGGAGGGATTTTATCCGTGAGGCGGACCCTGATGTTATAATTGGATATAACATATGCAAATTTGACTTACCATATTTGATTGAGAGAGCTGCAACCTTGAAAATAGTAGAATTTCCATTCTTAGGCCGTATCAGGAACAGTAGGGTCAGAGTCAAAGACACAACCTTTTCATCCAGACAGTATGGGACTAGGGAAAGTAAAGAAGTTATGATAGAAGGGAGAGTCCAGTTTGATTTGCTCCAGAAAGAAGATGTCCATCATTCAATCATATCCGATCTTCAGAATGGAAATCCAGAAACTAGGAGGCGTCTTGCTGTGTATTGTTTGAAGGATGCATATCTCCCTCAGCGGCTTTTGGATAAATTAATGTTCATTTACAATTACGTGGAGATGGCTCGAGTTACAGGTGTCCCGATTTCGTTCCTGCTTTCCAGGGGACAAAGCATTAAGGTGCTTTCACAACTTCTTAGGAAGGCAAAACAGAAGAACCTGGTTCTTCCTAATGCCAAACAGGCAGGGTCAGAGCAAGGAACATTTGAAGGCGCCACTGTATTGGAGGCAAAGGCTGGATATTATGAAAAGCCAATTGCTACTTTGGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGGTGACCCCTGAAGATGCTCGCAAGCTCAACCTCCCTCCGGAGTCAGTGAACAAAACTCCATCTGGTGAAACATTTGTTAAATCAGATTTGCAAAAGGGGATACTTCCTGAAATTCTTGAAGAGCTATTAGCAGCTCGTAAAAGGGCAAAAGCAGATCTAAAGGAGGCAAAGGATCCCCTAGAAAAAGCTGTGCTTGATGGTCGACAGTTGGCCCTGAAGATTAGTGCAAATTCTGTATATGGGTTTACAGGGGCTACTGTTGGTCAGTTACCATGCTTAGAGATATCGTCCAGTGTAACAAGCTATGGGCGACAAATGATCGAGCACACAAAAAAACTGGTGGAAGATAAATTTACAACGCTTAATGGCTACGAACACAATGCTGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAATTTGGTATTTCTACTGTAGAAGAAGCTATGAACTTGGGGAGAGAAGCTGCCGAATATATTAGTGGAACTTTTATCAAGCCCATTAAACTAGAGTTTGAGAAGATTTACTATCCATATCTCCTGATCAGCAAAAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAATTTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGGGACAATTGTTTATTAGTCAAAAACCTGGTGACTGATTGCCTTCACAAAATACTGATAGACCGGGACATCCCTGGGGCAGTCCAGTATGTCAAAAATGCAATTTCAGATCTTCTCATGAATCGTATGGATTTATCGCTTTTGGTTATTACAAAGGGTTTGACGAAGACAGGAGATGATTACGAAGTGAAGGCAGCTCACGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACAGCTCCAAATGTTGGGGATAGAGTACCTTATGTGATTATTAAAGCTGCAAAAGGTGCCAAGGCTTATGAGAGATCAGAGGATCCAATATATGTACTAGAGAACAACATACCAATAGACCCTCATTACTATCTTGAGAATCAAATAAGCAAGCCAATTCTAAGGATTTTTGAGCCAATATTGAAGAATGCTAGTAAGGATCTTCTCCATGGAAGCCACACAAGATCTATTTCTATTTCTACTCCATCAAACAGTGGCATAATGAAATTTGCTACGAAGCAGCTCACTTGTATCGGTTGCAAAGCTTTGCTTAGACGAAGCATGACAAGAGAAAACGGTAATTGGGTGCAAGAACGTGAAAAGATGAGGCAAGAAAGAGAGGAGCTTCGTTTACGCTTAGAACTAAATGAAGTACGTACCAAGAATACAGAAGAGATGCTAGCTGCAATAGCCACCAAATTAGGGATTTCCAAAGGGGCTACTTCCAAGAATGTCATAGTGGAAAAAAGATCCACTGAGGAGTATGCCACAACTGCTGGTCCTTATCATAGCAATACTTGCAATAGGGTTGTTTCTTTAGATTCCTCTACTACCAGTAACAACAAGAGAGAAGGTTCATCCGTGGGGAGTGTGGTTGGTGCTTCTAGAACTGTTCAAGAAGTTGAGAGCTCTAAGATTATGGGAGAATATAGGAGACTACCTAGTGCAGAAATGAAGGAGAAGAGGGAGAAGAGTTTGTGCTTTAGGTGTGATGAGCCCTTCACTAGAGATCGCATATGCAACAATAAACAATTGAGGATGATCATTCTTGTTGAGGAAGAAGAGGGTGAGAATGAAGAAGAGGTGGAGGCCAAAATGGAAAACTTTAACTCTCTACAACTCTCCATGTATTCTATGATTAGACTCACATCCACTAAGTCATGGAAGGTAAGGGGAACATTGAAGGAGAAACATGTGGTGATTCTGATTGACTGTGAAGCCTCTCGCAATTTCATTTCAACGGAATTGATGCACAATTTGCAATTGAAGGTGGAAGAAACTCATGCTTATGTTGTAAAAGTGGGAGATGGACATAAGGTCGGGTGCAAGGGAAAATGTGCTCAACTCAAACTCTTCATGCAACAACTAGAGGTGATCCAAGACTTATATGTGTTTGGCTTGAAGGGAATGGACCTAGTGTTGGGATTAAAATGGTTAGCAAGCCTGGGAGAAGTGAAAGCTGACTTTGGGAGAATGGAATTAACTCTAAAAAAGGGGAACTCAGTAATCACAATAGAAGGGGACCTTGCATTGAATAGGACAAAAATTTTCTATGGAGCTTTCATGCAAGTGCTTTTAGAGGAGATGAGAGGAAGGAAGATCACACTCTCTGTTCACATTGCAAAGGGAGGGAAGCGGAATTGTACTGCAAAACAGTGGCTCAAGGTAGTGTCCGAGCTAGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGTCAAGGTTCGCTCCATCAGGATGTTCTCTGCACAAGTCGAGATTGTCCAATTTTCTATCGACGAAAAAAGGCGCAGAAAGACATGGCTGAAGCAAAGACGCAATTGGATCGATGGAGCTTCTAA 4233 0.4255 MNKGGRKRPPPPSQPSPSNPPKNQALNQEDDFVDEDVFLNETLISEDEESLILRDIEHRQALADRLAKWTRPPLSPDYLGQSRSVLFQQLEMDYVIGESHKELLPNSSGSAAIIRIFGVTKEGHSVCCNVHGFEPYFYISCPPGMRPDDISHFHQILEARMREANRNSNVGKLVRRIELVQKRSIMYYQQSDSHPFLKIVVALPTMVASCRGILDRGIQLDGLGMKTFMTYESNVLFTLRFMIDCNIVGGNWIELLAGKYKKTSKTLTYCQLEFDCLYSELISHTPEGEYSKMAPFRILSFDIECAGRKGHFPEPSHDPVIQIANLVTLQGEDQPLIRNVMTLKSCSPIVGVDVMSFDTEREVLLAWRDFIREADPDVIIGYNICKFDLPYLIERAATLKIVEFPFLGRIRNSRVRVKDTTFSSRQYGTRESKEVMIEGRVQFDLLQKEDVHHSIISDLQNGNPETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVLPNAKQAGSEQGTFEGATVLEAKAGYYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNLPPESVNKTPSGETFVKSDLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGISTVEEAMNLGREAAEYISGTFIKPIKLEFEKIYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVTDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPHYYLENQISKPILRIFEPILKNASKDLLHGSHTRSISISTPSNSGIMKFATKQLTCIGCKALLRRSMTRENGNWVQEREKMRQEREELRLRLELNEVRTKNTEEMLAAIATKLGISKGATSKNVIVEKRSTEEYATTAGPYHSNTCNRVVSLDSSTTSNNKREGSSVGSVVGASRTVQEVESSKIMGEYRRLPSAEMKEKREKSLCFRCDEPFTRDRICNNKQLRMIILVEEEEGENEEEVEAKMENFNSLQLSMYSMIRLTSTKSWKVRGTLKEKHVVILIDCEASRNFISTELMHNLQLKVEETHAYVVKVGDGHKVGCKGKCAQLKLFMQQLEVIQDLYVFGLKGMDLVLGLKWLASLGEVKADFGRMELTLKKGNSVITIEGDLALNRTKIFYGAFMQVLLEEMRGRKITLSVHIAKGGKRNCTAKQWLKVVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKTQLDRWSF 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0668 1410 MobiDBLite consensus disorder prediction 1069 1090 - -
Lal21g0668 1410 ProSitePatterns DNA polymerase family B signature. 717 725 IPR017964 GO:0000166|GO:0003676
Lal21g0668 1410 Gene3D Acid Proteases 1169 1301 IPR021109 -
Lal21g0668 1410 Gene3D Helix hairpin bin 618 670 - -
Lal21g0668 1410 Pfam C4-type zinc-finger of DNA polymerase delta 1348 1391 IPR025687 -
Lal21g0668 1410 SUPERFAMILY Ribonuclease H-like 109 509 IPR012337 -
Lal21g0668 1410 Gene3D - 791 946 IPR042087 -
Lal21g0668 1410 Pfam DNA polymerase family B 503 936 IPR006134 GO:0000166|GO:0003677
Lal21g0668 1410 Gene3D - 448 546 IPR036397 GO:0003676
Lal21g0668 1410 Coils Coil 988 1015 - -
Lal21g0668 1410 CDD POLBc_delta 544 937 - -
Lal21g0668 1410 Gene3D - 297 447 IPR036397 GO:0003676
Lal21g0668 1410 Gene3D DNA Polymerase, chain B, domain 1 90 267 - -
Lal21g0668 1410 PRINTS DNA-directed DNA-polymerase family B signature 562 575 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lal21g0668 1410 PRINTS DNA-directed DNA-polymerase family B signature 654 666 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lal21g0668 1410 PRINTS DNA-directed DNA-polymerase family B signature 715 723 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lal21g0668 1410 MobiDBLite consensus disorder prediction 1 30 - -
Lal21g0668 1410 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 83 1138 - -
Lal21g0668 1410 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 1341 1409 - -
Lal21g0668 1410 SUPERFAMILY DNA/RNA polymerases 528 938 IPR043502 -
Lal21g0668 1410 Pfam DNA polymerase family B, exonuclease domain 120 447 IPR006133 -
Lal21g0668 1410 Pfam Retroviral aspartyl protease 1194 1294 - -
Lal21g0668 1410 CDD retropepsin_like 1186 1276 - -
Lal21g0668 1410 SMART polmehr3 294 729 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lal21g0668 1410 TIGRFAM pol2: DNA polymerase (pol2) 537 934 - -
Lal21g0668 1410 CDD DNA_polB_delta_exo 290 495 - -
Lal21g0668 1410 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 1341 1409 - -
Lal21g0668 1410 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 83 1138 - -
Lal21g0668 1410 Gene3D Palm domain of DNA polymerase 547 774 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0668 Lal-Chr21 5176687 5193870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0668 4 977 Core DNA Replication Machinery Family AT5G63960 79.293 0.0 1670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0668 K02327 - gmx:100817379 1757.27