Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0666 ATGAACAAGGTCCAAATTGAAATTACCATTCCTCATTTGTTCAGATGCCCTATAAGTCTAGACTTGTTTGAAGATCCAGTGACCTTAAGCACAGGCCAAACATATGACAGATCAAACATAGTACAATGGTTAGATGCTGGTAATCTCACATGTCCTGTAACAATGCAGAAGCTTCATGATTCATCTATTGTTCCAAACCATACACTAAGACATTTGATAGATCAGTGGCTTCAACTTTGTCACCAATTTGACACTGGTAACTCTGAAACCATAGATTATCTAGCTTCTCTAAAACACACCCTTCAATCTCATGATTCCACCTTAGAAAATAAGGTACAAGCACTTGGTAAAATTAGAGTTTTATCAGATGAGTATTGCTCTTTTAAAAAGTCTTGTTTCATCAAATTGAGTTTCTTGTCTCTACTCTTGGAACTAGTTTTTGGAACAGAATATGCTAAGCTCTCCAAAAATCACATGGAGTTGAAGGAACTAGCACTTTCTTGTATTATAAATTTTTTACCCCTTGTGAGTTTGGAGCCTCTAAATATGATCAAAGATGAGTCAAAATTAGCAACATTTATGCACTTATTTGAAAAGGGTACTATTTCAATGAAGATTAGTTTGTGTAATCTTATAGAGTCAACAGCATCATCATCAAAGACAGAAGAGGTATGTTACATGCTTGGAAACACTAACAAACTAGTACATGATATTGTTCTATTTTGTCACAAAAAATTTGAACTTTCTAAGGCTGCAATCAAAGCCATATCAGCATTATGTTCATTAGAATCCAACAAAGAAAGTTTGGTAAGAGCAGGAGCAATAGATGGAGTCATAAGATACATTTCAGGTTGTGAAAGAAAGCAGAAGAATTTAGCAGCATTGGGCATGAGCATAATAGAGAAACTCTTGGTTCTAGAGAGTGCTAAAGAGGCATTAGTGAATAATCCAAATGGGGTTGAAACTTTGGTAAAGATGGTGTTTATGGTGTGTAATCAAGAATGCAGTGAAGGTTCTGTTGAGGTGCTTTTGATTATTTGTGGTGATTTTAGGAGTGCAAGAGAGGAAGCTATTGGTGCTGGAGTTTTGACTCAATTGTTGTTCCTTATGCAGAGTCAGTGTGCCACAAAAACTAAGACAAAAGCTAGAATGCTTCTCAAATTGCTTAGATCAAAATGGACAGAGGAATCAAAGCAGGTTTAG 1203 0.3574 MNKVQIEITIPHLFRCPISLDLFEDPVTLSTGQTYDRSNIVQWLDAGNLTCPVTMQKLHDSSIVPNHTLRHLIDQWLQLCHQFDTGNSETIDYLASLKHTLQSHDSTLENKVQALGKIRVLSDEYCSFKKSCFIKLSFLSLLLELVFGTEYAKLSKNHMELKELALSCIINFLPLVSLEPLNMIKDESKLATFMHLFEKGTISMKISLCNLIESTASSSKTEEVCYMLGNTNKLVHDIVLFCHKKFELSKAAIKAISALCSLESNKESLVRAGAIDGVIRYISGCERKQKNLAALGMSIIEKLLVLESAKEALVNNPNGVETLVKMVFMVCNQECSEGSVEVLLIICGDFRSAREEAIGAGVLTQLLFLMQSQCATKTKTKARMLLKLLRSKWTEESKQV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0666 400 PANTHER OS02G0542800 PROTEIN 9 392 - -
Lal21g0666 400 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lal21g0666 400 SUPERFAMILY RING/U-box 8 80 - -
Lal21g0666 400 SUPERFAMILY ARM repeat 99 379 IPR016024 -
Lal21g0666 400 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lal21g0666 400 CDD RING-Ubox_PUB 14 56 IPR045210 -
Lal21g0666 400 PANTHER WDSAM1 PROTEIN 9 392 IPR045185 GO:0061630
Lal21g0666 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 80 IPR013083 -
Lal21g0666 400 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Lal21g0666 400 Gene3D - 81 400 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0666 Lal-Chr21 5153103 5154305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0666 1 397 U-box Gene Family AT1G49780 28.744 1.44e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0666 - - gmx:100819468 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0666 21 5153103 5154305 Lal21g0666 21 5153103 5154305 ECH