Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0661 ATGCCCTTCATAAGAGCACACTGCATTAATCAAAGAAAAGCATTTACAGGTTTGGCAAGCGAGATGAGTGGAAGTGCCAGAAAGCGCTCTGCAAAGTGGGATATGAGAGACGATCCTGAATTTGCACCTGATAGTAAGCAATTGCGGTCTTATGAAGACAGAGGTTCAAATAAGGATGATATTATTAATAAAGACTATAGAGATTTGGATGAAACACTAACATCAGATGCTGATGGAAGTTACCACAAGAAATTTTCTCCAGGGTTTGAGGCGTGGAAATATAAGAGACACAGTCAATCCCCGAAAACTGGTCGGAGCAGGTCAGTCAGGAGTAATCAGAGCCGGAGCCCTCCTCATGGTTTTAAGCGGGATTCAGGATTCAATGACAGAAATAGAACGAAGGCTGGAAGGTCGACACAACCATGTAGAGAATTTGCTGCTGGTAAATGCAAAAGAGGCAGCCAATGCAATTTTCTTCACCATGATAATCAAAACTATGAGGATAGTTTGGAAAGTAAGCACAGGGAAGATGGTGCTCCCAAATCTACTCCCCATGACAATAGAGACCCTTCTCATAGGAGTGGTAGATCTAATGAAGATTGCATTAATTTTGCTAAAGGCAGGTGTAGAATGGGAGCATCATGCAACTTTGTGCATAACAATTCTGATGGATATAGTAAAGATTCAGCACATGAATCAACTAGAGAAAGGGAAAATGATAGAAGACGCAGAGATGATTCTTTTGATCAGGGTGGCGGGCATCACCGTAGTGGTCCTACTCCTTGCAAATTTTTTGCTAATGGAAACTGCCGTAATGGTAAATCTTGTAGGTTTTCTCATGATAGGCAAACATATGGGAGCCCTAACAGAAGATCAATGGATGATAGGTGGGGGAACAATCCTGGTGGAGATTATCAGATGTTGGATACACCAAAATTGATTGATTCTGGTAGCCCTACTGGAAGACAAAGAGATGATAGATGGGGTTCAGATGGCAATATGGTAGAGAAGGACAATCCAAAGCGGAATGATGCAATTGCTGTGTCTGATACAGCAAAGCTGGTTGAGGACAAATGTGGAAATATGGGTGCCACAGATCCTGGATTCACTGTTTGGCCTACGAAGGATGGATGGGGTCTTGGTTTAGATAAGAACAGAGTGCATGGTGAACCAACATTTTTGAATGATAAGAAGGAAACTGACCATCGGATGGCAGAAAATGCTGGTGCCAACATGTGTGTTTCCCAGCCAATGGGTACAAGCAATTGGTCTGATGATGAAATGTCTCCTGATTGGAATTATAGGGTGGGATCTTCCAGTCATAATCAAGAAGAGCATGAACAGAGTAAGCATGGGATAACCCTGGTTGGTACATATTTAGCCACTCAACATGAAGGAACACAAGTTCCAGTTGAACAAAGTCAAGTGGCTGTTCCTGATCTTCCTTCAAGAGCAGTTGCTGAAAGTATGCGTAACCAACAAGTTTCTACAGATGTTCTTCCACGGCAAGGCTTTAATCAGAATGCAAAGAATATAAATCCTTTCCATTCTTCAAGTAGCCATGCAGTTGGACAAAGTCAAGTTGCTCTTTCCATGCTTCCCTCGAGAGGAATTGTTGAAAGTATGCATAATCAAGAAGTCTCTGTTGAGAAAAAGGACATTGTTGAACCAAATATCACGGATGCAGGCTTATCACAAGTTAGTTCAAAATATCCTCCAACTCAGAACATGGTAAGCAATGAACAGCTTGCGCAGCTTAGCAATATCTCAGCTTCTCTGGCTCATATCCTTGGAACAGGTCAGCAACTGCCACAACTTTGTGCTGCTTTTAATTCTCATGATGCAAAGGATAGCCACTCGCAAGCCAAAACTGAAGTCCCAGCTATGCCTGTTTCCAATACATTCATCATTCCAGATCTTGTGGTTGGATTCACGAAGCAGTATGATGCAATGTGTGATAGTATTGAAACAAAGTATGATGGTGCAAGTAGGGCTACCTTGGCCTTTTCTCCAAGTAAAAAAAATGCAGAAGATAAAGTAGAAAATCCATCACTGGTGTCTAACTCAGGGAGACAAAATTGTGGCGACTCTTATAAAGCTGCCTGCTCAAAAGAACATATTGTCAAGGGTGAACATTTAATACAGCTGCAGCCAGGGGAAAACCTTGAGGTTAAAAACGAGAAAAATGAAGTGGTAGTTGAGGAAAGGCAAAATTCTCCTAGTGATCATAAAAATGCAAAAGGTCCTTCGCAAAACATGGACCAAAACGGTGGACCTGATGACGCCAAGAAAACAAAGGATGCAAAGGGGATTCGTGCATTTAAATTTGCATTGGTTGACTTTGTTAAGGAACTTCTGAAACCAGCATGGAAAGAAGGTCAAATTAACAAAGAAGACTATAAAGCAATTGTGAAGAAAGCTGTAGATAAAGTAACTGGTACCATGCAGAGCGCCAATATTCCTCAGACCCAAGAGAAAATTGACCACTATTTATCATTCTCAAAACCAAAACTTAACAAACTTGTACAGGTCAGTGGTGATTAA 2544 0.4143 MPFIRAHCINQRKAFTGLASEMSGSARKRSAKWDMRDDPEFAPDSKQLRSYEDRGSNKDDIINKDYRDLDETLTSDADGSYHKKFSPGFEAWKYKRHSQSPKTGRSRSVRSNQSRSPPHGFKRDSGFNDRNRTKAGRSTQPCREFAAGKCKRGSQCNFLHHDNQNYEDSLESKHREDGAPKSTPHDNRDPSHRSGRSNEDCINFAKGRCRMGASCNFVHNNSDGYSKDSAHESTRERENDRRRRDDSFDQGGGHHRSGPTPCKFFANGNCRNGKSCRFSHDRQTYGSPNRRSMDDRWGNNPGGDYQMLDTPKLIDSGSPTGRQRDDRWGSDGNMVEKDNPKRNDAIAVSDTAKLVEDKCGNMGATDPGFTVWPTKDGWGLGLDKNRVHGEPTFLNDKKETDHRMAENAGANMCVSQPMGTSNWSDDEMSPDWNYRVGSSSHNQEEHEQSKHGITLVGTYLATQHEGTQVPVEQSQVAVPDLPSRAVAESMRNQQVSTDVLPRQGFNQNAKNINPFHSSSSHAVGQSQVALSMLPSRGIVESMHNQEVSVEKKDIVEPNITDAGLSQVSSKYPPTQNMVSNEQLAQLSNISASLAHILGTGQQLPQLCAAFNSHDAKDSHSQAKTEVPAMPVSNTFIIPDLVVGFTKQYDAMCDSIETKYDGASRATLAFSPSKKNAEDKVENPSLVSNSGRQNCGDSYKAACSKEHIVKGEHLIQLQPGENLEVKNEKNEVVVEERQNSPSDHKNAKGPSQNMDQNGGPDDAKKTKDAKGIRAFKFALVDFVKELLKPAWKEGQINKEDYKAIVKKAVDKVTGTMQSANIPQTQEKIDHYLSFSKPKLNKLVQVSGD 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0661 847 MobiDBLite consensus disorder prediction 90 144 - -
Lal21g0661 847 ProSiteProfiles Zinc finger C3H1-type profile. 256 283 IPR000571 GO:0046872
Lal21g0661 847 Pfam RNA-binding, Nab2-type zinc finger 200 219 - -
Lal21g0661 847 MobiDBLite consensus disorder prediction 20 66 - -
Lal21g0661 847 SUPERFAMILY CCCH zinc finger 259 281 IPR036855 GO:0046872
Lal21g0661 847 MobiDBLite consensus disorder prediction 672 692 - -
Lal21g0661 847 MobiDBLite consensus disorder prediction 225 252 - -
Lal21g0661 847 MobiDBLite consensus disorder prediction 167 196 - -
Lal21g0661 847 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Lal21g0661 847 MobiDBLite consensus disorder prediction 719 766 - -
Lal21g0661 847 MobiDBLite consensus disorder prediction 319 339 - -
Lal21g0661 847 MobiDBLite consensus disorder prediction 723 742 - -
Lal21g0661 847 SMART c3hfinal6 196 221 IPR000571 GO:0046872
Lal21g0661 847 SMART c3hfinal6 256 282 IPR000571 GO:0046872
Lal21g0661 847 SMART c3hfinal6 136 162 IPR000571 GO:0046872
Lal21g0661 847 MobiDBLite consensus disorder prediction 281 339 - -
Lal21g0661 847 MobiDBLite consensus disorder prediction 220 262 - -
Lal21g0661 847 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 22 843 - -
Lal21g0661 847 ProSiteProfiles Zinc finger C3H1-type profile. 195 222 IPR000571 GO:0046872
Lal21g0661 847 Pfam CCCH-type zinc finger 261 281 IPR041367 -
Lal21g0661 847 MobiDBLite consensus disorder prediction 27 66 - -
Lal21g0661 847 Gene3D - 254 330 - -
Lal21g0661 847 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 161 IPR000571 GO:0046872
Lal21g0661 847 Gene3D - 136 223 - -
Lal21g0661 847 MobiDBLite consensus disorder prediction 104 119 - -
Lal21g0661 847 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 22 843 - -
Lal21g0661 847 MobiDBLite consensus disorder prediction 743 758 - -
Lal21g0661 847 MobiDBLite consensus disorder prediction 167 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0661 Lal-Chr21 5094294 5099102 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal21g0661 zf-CCCH 2.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0661 - K22909 gmx:100783856 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0661 21 5094294 5099102 Lal21g0661 21 5094294 5099102 ECH
Lal21g0661 21 5094294 5099102 Lal4g0621 4 4585432 4594437 ECH
Lal21g0661 21 5094294 5099102 Lal4g0621 4 4585432 4594437 LSH