Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0658 ATGGCTCCTGCCACCTCATCACTATCATCGTCGGCATCTCAGAGGCACGTCGGATTCATCCGCCGCACTCAGGCGCCTAAGCTCCGTCATCCGTCGCCGGAGGCGGAAGCAGCGGTGGAGAAGTACAGGACGATGATGGAAATAATGGCGAAGGCGCGATACGTTGTCTTGGAGAGGGACAGTTACAACGACCTGAGCTGCGAACAATGTGGCTCCGGCGACTTGCCGGAGGAGCTGCTTCTGTGCGATAAATGTGATAAAGGATTTCACATGAAATGTGTGAGGCCAATTGTGGTTAGGATCCCGATTGGATCGTGGCTTTGCCCTAAGTGTTCGGGACAGAAAAAGAAACGAGTTGGAAGTTTCTCTCAGAAGAAGATATTTGATTTTTTTGGGATTCAGGCTGACAAAACTTCTTCTCAAGGTTCTAGGAAGCGTCGGAAACGTTCAGGACCTCAGATAGTACAGAAGAAAAAAAGGAGATTATTACCATTTGTTCCTTCAGGAGATCCAGCCCAGAGACTGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGCATTGAATATTGAATACAGTGATCACATCACTTACTTGCCCAGCATGGCTCCTAGATCCGCTAATGAAGCCAGCTTAGAAAGTGGTGGCATGCAGAATCTTACCAAGGAGGATACGGAAACCATGGAGCACTGCAAAGCTATGTCCAAAAGAGGCGAATGCCCTCCTTTCGTAGTTGTTTTCGATTCATGTGAAGGCTATACTGTGGAGGCTGATGGCCCAATCAAGGATATGACATTCATTGCGGAATACACTGGCGATGTGGACTACCTCAAGAAACGGGAACGCGATGATTGTGATAGCATAATGACCCTTCTTTCAGCATCAGAGCCTGCAGATAGTCTTGTCATTTGTGCGGACAAACGTGGCAATATTTCTCGCTTCATTAGTGGCATAAACAATCATACTCGCGCGCTCTATAATTTGTTTGGATTTGGTATGCTCTTTAAAGAACTCAAGGAAGGTAAGAAGAAGCTGAATTGCAAATGTATTAGGTACAGTGTTAATGGGGAATCCAGGGTCTTTTTGGTCGCCACTCGTGATATTGCTAAGGGGGAGAGGCTTTATTATGACTATAATGGTTATGAAGATGAATACCCAACTCATCATTTTGTCTGA 1176 0.4609 MAPATSSLSSSASQRHVGFIRRTQAPKLRHPSPEAEAAVEKYRTMMEIMAKARYVVLERDSYNDLSCEQCGSGDLPEELLLCDKCDKGFHMKCVRPIVVRIPIGSWLCPKCSGQKKKRVGSFSQKKIFDFFGIQADKTSSQGSRKRRKRSGPQIVQKKKRRLLPFVPSGDPAQRLKQMGSLASALTALNIEYSDHITYLPSMAPRSANEASLESGGMQNLTKEDTETMEHCKAMSKRGECPPFVVVFDSCEGYTVEADGPIKDMTFIAEYTGDVDYLKKRERDDCDSIMTLLSASEPADSLVICADKRGNISRFISGINNHTRALYNLFGFGMLFKELKEGKKKLNCKCIRYSVNGESRVFLVATRDIAKGERLYYDYNGYEDEYPTHHFV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0658 391 SUPERFAMILY SET domain 234 380 IPR046341 -
Lal21g0658 391 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 22 389 - -
Lal21g0658 391 Pfam PHD-finger 67 112 IPR019787 -
Lal21g0658 391 CDD SET_ATXR5_6-like 238 391 - -
Lal21g0658 391 SUPERFAMILY FYVE/PHD zinc finger 57 118 IPR011011 -
Lal21g0658 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 125 IPR013083 -
Lal21g0658 391 CDD PHD_RSF1 67 111 - -
Lal21g0658 391 PANTHER HISTONE ACETYLTRANSFERASE 22 389 - -
Lal21g0658 391 ProSiteProfiles SET domain profile. 241 379 IPR001214 GO:0005515
Lal21g0658 391 ProSitePatterns Zinc finger PHD-type signature. 67 111 IPR019786 -
Lal21g0658 391 Gene3D SET domain 146 391 IPR046341 -
Lal21g0658 391 ProSiteProfiles Zinc finger PHD-type profile. 64 114 IPR019787 -
Lal21g0658 391 SMART PHD_3 66 112 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0658 Lal-Chr21 5068732 5072779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0658 57 111 C2H2 Transcription Factor Family AT3G01460 38.182 4.20e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal21g0658 PHD 5e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0658 K24406 - gmx:100785817 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0658 21 5068732 5072779 Lal21g0658 21 5068732 5072779 ECH
Lal17g0728 17 5162795 5166680 Lal21g0658 21 5068732 5072779 LSH