Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0657 ATGCTGATCTCTGATGAAAGAGATAGTGATGTGTTCTTTGACTCTCTGGATTGCTTGTCACCTCCTCAAGAATGTGTTTTGACCAAACAAAAGTTTGGTTATGAGATTTGGGTAAATGAACCTCTTAGTGTGAGTGAAAGAAGGGAAAAATTTCTACAAGGGATGAGTTTAGTTGATGATTCTTCTAAGGTTTGTTTGCAAGAGAAAATGGTGAGTTTTGATGAATCATCAGTGAGCTTGGGAAAGGAGAGGATCTGGAATTGCAATGGAGCTGTCACAAATGCTTCCATTGTGCTTGATGATCATGTTCCTGAGAAATCGGTTACTGCAGGATGTGAATCAAGTTTTGAAGCACAGGTCTTGTTTGATGAACTCAAAGGATGCCATGACCACGAAGATAAATCGGAGCCGGATTTAAGTTTCCAAGGGAAGGTGCATGAGCTCTCTTCTTCCAATCAAGAGTGCAGAGATAGAGAAGGTGAGGCTGTAGAAAAATTTAAGGACTTCGAAATTTGTAAGAACAAAAAGAAATGTTGGTGGGCACGCATCGTAAACAGCATAAAAGGAGGTGAAGGGAAAAATCGATCAAAATTGAAGACAAGAACAAGTGAAAGTCGTAGAATACATGTAAGACAGAACAAAAAGAAGTGGATGGAATTGAGTGCACTGTACATTGGACAAGAGATTAGAGCACACAATGGCCTAATCTGGACTATAAAATTTAGTCCCAGTGGCAAGTATCTAGCTAGTGGAGGTGAAGACGGTGTTGTACGCGTATGGCGCGTTGTATCCCTTGATACATCCAGTGATTACTTCATTACAGATGACAGTATTATTAGCAAAGTAAAACATGACATCTCATGTTCTCAGAGGAAAAACTCAAGCCAATCCTTAAATGCGCTTCCAAACAAGATCTTACAAATAGAGGAATCACCACTGCAAGAATTTTATGGTCATTCTGGCGATGTCTTGGATGTAGCTTGGTCTAGTTCAGATGTTCTCCTTTCATCTTCTACGGATAAAACCGTTCGCTTGTGGCAAATTGGTTATAATGAATGTCAAAGTGTTTTCCATCACAAAGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATTAGTGGGTCCACAGATGGTAAAGTCCGAATATGGGGGGTACTTGAAGAGCGAGTAGTGGATTGGGCAGACATACGAGACGCCGTAAGTGCTATAAGTTACCAGCCAGATGGAAAGGGGTTTGTAGTTGGTACCCTTACAGGCACTTGTCGCTTTTTTATTGCTTCAGGCCTTCCGAAGTCAGGAAGTCAGATGTCTGGTTCATTTACATCGACCGAAAAACATTTAATTTCAGTTGGAGACGACTCTCATATTTATGTATGGAACTTCAATGAGTTGAGAAATGCGTCTTCCAAACACACAAAATCTGAGTATTCCTGTGAGTACTTTTCCTCCAAGGGGGTCACCGTTGCAATACCGTGGTCAGACATGAGCGCAAGCTCTCACAATAAGTCTCCCGGCTATTCTTCAGAAGTGCATACATCTACCGTTCCCAGGGCTAGAGAGTCAAAACGTTTTTCTTTTCGAAGTGGGTTCTTAATTGATGGTACATGCCAAGGTTCTATGACATGGCCTGAGGAAAAGCTTGTCAGTTTAGATTTACCTTTTCCGGAAGATGAATTTGATCACCAGCAGTTATGCCTCAAAAATATTTTCCATAATAATTCTGTATCAGAAATATGGGGACTATCAATTGTGGCAGCTGATTGTGATGGAATTATCAAGACATTCCACAACTTTGGATTACCTGTTAGGCTTTAA 1830 0.4055 MLISDERDSDVFFDSLDCLSPPQECVLTKQKFGYEIWVNEPLSVSERREKFLQGMSLVDDSSKVCLQEKMVSFDESSVSLGKERIWNCNGAVTNASIVLDDHVPEKSVTAGCESSFEAQVLFDELKGCHDHEDKSEPDLSFQGKVHELSSSNQECRDREGEAVEKFKDFEICKNKKKCWWARIVNSIKGGEGKNRSKLKTRTSESRRIHVRQNKKKWMELSALYIGQEIRAHNGLIWTIKFSPSGKYLASGGEDGVVRVWRVVSLDTSSDYFITDDSIISKVKHDISCSQRKNSSQSLNALPNKILQIEESPLQEFYGHSGDVLDVAWSSSDVLLSSSTDKTVRLWQIGYNECQSVFHHKDYVTCIQFNPVDENYFISGSTDGKVRIWGVLEERVVDWADIRDAVSAISYQPDGKGFVVGTLTGTCRFFIASGLPKSGSQMSGSFTSTEKHLISVGDDSHIYVWNFNELRNASSKHTKSEYSCEYFSSKGVTVAIPWSDMSASSHNKSPGYSSEVHTSTVPRARESKRFSFRSGFLIDGTCQGSMTWPEEKLVSLDLPFPEDEFDHQQLCLKNIFHNNSVSEIWGLSIVAADCDGIIKTFHNFGLPVRL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0657 609 Gene3D - 269 394 IPR015943 GO:0005515
Lal21g0657 609 Gene3D - 134 268 IPR015943 GO:0005515
Lal21g0657 609 Gene3D - 395 508 IPR015943 GO:0005515
Lal21g0657 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 388 - -
Lal21g0657 609 Pfam WD domain, G-beta repeat 311 346 IPR001680 GO:0005515
Lal21g0657 609 Pfam WD domain, G-beta repeat 228 260 IPR001680 GO:0005515
Lal21g0657 609 Pfam WD domain, G-beta repeat 352 388 IPR001680 GO:0005515
Lal21g0657 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 348 - -
Lal21g0657 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 270 IPR001680 GO:0005515
Lal21g0657 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 356 IPR001680 GO:0005515
Lal21g0657 609 SMART WD40_4 350 389 IPR001680 GO:0005515
Lal21g0657 609 SMART WD40_4 309 347 IPR001680 GO:0005515
Lal21g0657 609 SMART WD40_4 222 261 IPR001680 GO:0005515
Lal21g0657 609 SMART WD40_4 391 465 IPR001680 GO:0005515
Lal21g0657 609 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 432 - -
Lal21g0657 609 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 433 609 - -
Lal21g0657 609 SUPERFAMILY WD40 repeat-like 225 495 IPR036322 GO:0005515
Lal21g0657 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 388 IPR001680 GO:0005515
Lal21g0657 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 262 - -
Lal21g0657 609 PANTHER WD REPEAT DOMAIN 44 433 609 IPR040324 -
Lal21g0657 609 PANTHER WD REPEAT DOMAIN 44 1 432 IPR040324 -
Lal21g0657 609 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Lal21g0657 609 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Lal21g0657 609 PRINTS G protein beta WD-40 repeat signature 376 390 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0657 Lal-Chr21 5027501 5031230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0657 313 466 Miscellaneous Gene Families AT5G08390 26.786 1.05e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0657 K20241 - gmx:100780979 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0657 21 5027501 5031230 Lal21g0657 21 5027501 5031230 ECH
Lal21g0657 21 5027501 5031230 Lal4g0619 4 4568558 4578994 LSH
Lal17g0727 17 5148346 5152072 Lal21g0657 21 5027501 5031230 LSH
Lal19g0936 19 13379921 13384245 Lal21g0657 21 5027501 5031230 PCT
Lal21g0657 21 5027501 5031230 Lal19g0936 19 13379921 13384245 PCT