Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0650 ATGGATTCGGACAATTTCCGTTCCATATTGGAGAGTTCAGGCGTGGACGTGTGGTCGTTCATCGACACCGCAATAGCCGTCGCCTTAACGGATTCCGGCGAGGAACTGAAGCGCCGGAGAGACGTAATTGTCGAGAGGCTATACTCAGCCAACACTTCTCCTTTGAGTTGCCGGAATTGCGAAGTCGGCGGCAACCGTAGCGTCGTCGCCACCAACGGTAACCAAGGTAATAAACATATAAGCCCTAGCCGTAGCCCTAAACGACAATCACAACAACGCCGTTTTGCCTCCTCCCCCGAAACGCCACAGTCTCTCGAAAACGAAAACGAAAACGACAACGATTTAGATCCTTACGGTGGCTTGTTCGATGATGAACAAAAGAAGATTCTGGAAATTAAAGAGCAACTCGAAGAACCTGATCAGTCTGACGATTCATTGGTTGATTTGCTTCAAAATCTCGCTGATATGGATATTACATTCCAAGCTCTGAAGGAAACTGATATTGGGAGGCACGTGAATCTGTTGAGGAAGAATTCCTCTAATGATGTCCGCAAACTGGTGAAGCTACTTGTCAAGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTCAAATCCACATGGAGAAACTTCAACTCTAATTGCTGATGGAGACTCGCCTCCTCTTCAGAAAACCACCCAAAATGGGCATCATCCGATACCTGATTTTGCGCACTCACCGAATCCACACAATGGGAGTTCTGGGTCTGACCGCAATGGAGAATTGAAATCAAAAGTGATTCCTCCTCGCAGAGAAGCACCAACTCCACCACCTTCACTTCACACCCCTGCACCTTCTGCCCTTCAAATTAGACAGAGAGAACAGAGAGAGAGCAATTTTGATGCGGAGAGGCTTTCTTCTGCAACAAAAAGGCTTCAAGCAAACTACAAAGACGCTGAAAATGCCAAAAAACAAAGGACTATTCAGGTGATGGATATTCATGAATTACCAAAGTCAAAATCTAAGAATACCTTCTTTGCGAAGAACAAAGGCACTGCCGGTTCTCAAGGGAGGCACTGGTGA 1062 0.4642 MDSDNFRSILESSGVDVWSFIDTAIAVALTDSGEELKRRRDVIVERLYSANTSPLSCRNCEVGGNRSVVATNGNQGNKHISPSRSPKRQSQQRRFASSPETPQSLENENENDNDLDPYGGLFDDEQKKILEIKEQLEEPDQSDDSLVDLLQNLADMDITFQALKETDIGRHVNLLRKNSSNDVRKLVKLLVKKWKEIVDEWVKSNPHGETSTLIADGDSPPLQKTTQNGHHPIPDFAHSPNPHNGSSGSDRNGELKSKVIPPRREAPTPPPSLHTPAPSALQIRQREQRESNFDAERLSSATKRLQANYKDAENAKKQRTIQVMDIHELPKSKSKNTFFAKNKGTAGSQGRHW 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0650 353 MobiDBLite consensus disorder prediction 334 353 - -
Lal21g0650 353 ProSiteProfiles TFIIS N-terminal domain profile. 124 201 IPR017923 -
Lal21g0650 353 Coils Coil 295 315 - -
Lal21g0650 353 MobiDBLite consensus disorder prediction 68 106 - -
Lal21g0650 353 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 353 IPR044790 -
Lal21g0650 353 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 127 209 IPR035441 -
Lal21g0650 353 MobiDBLite consensus disorder prediction 206 232 - -
Lal21g0650 353 SMART TFS2_5 129 200 IPR003617 GO:0005634
Lal21g0650 353 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 353 - -
Lal21g0650 353 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 123 212 IPR035441 -
Lal21g0650 353 MobiDBLite consensus disorder prediction 206 295 - -
Lal21g0650 353 CDD TFIIS_I 126 199 - -
Lal21g0650 353 MobiDBLite consensus disorder prediction 68 120 - -
Lal21g0650 353 Pfam TFIIS helical bundle-like domain 149 198 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0650 Lal-Chr21 4970222 4973481 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lal21g0650 Med26 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0650 - - aip:107622503 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0650 21 4970222 4973481 Lal21g0650 21 4970222 4973481 ECH
Lal21g0650 21 4970222 4973481 Lal4g0610 4 4473640 4476967 ECH
Lal21g0650 21 4970222 4973481 Lal4g0446 4 3116200 3118221 LSH
Lal17g0707 17 4996202 5000646 Lal21g0650 21 4970222 4973481 LSH
Lal21g0650 21 4970222 4973481 Lal4g0610 4 4473640 4476967 LSH
Lal7g0801 7 14792722 14794642 Lal21g0650 21 4970222 4973481 PCT
Lal19g0926 19 13274483 13276975 Lal21g0650 21 4970222 4973481 PCT
Lal21g0650 21 4970222 4973481 Lal7g0801 7 14792722 14794642 PCT
Lal21g0650 21 4970222 4973481 Lal19g0926 19 13274483 13276975 PCT