Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0643 ATGGCTCTTCCAAAGCAAAGAACCGCTAGGGTTAGCAGAAACCCTGAATTGATTAGAGGAATTGGTAAATATTCAAGATCCAAAATGTACCATAAGAGAGGTCTATGGGCAATCAAGGCTAAAAACGGCGGCGTTTTACCCCGTCACGAGCCTAAGGCTAAGGTTGCAGCTCCTGCTGAGAAGGCACCTAAGTTCTACCCTGCTGATGATGTTAAGAAGCCACTTCTTAACAAACATAAACCCAAACCCACCAAACTTAGGTCTAGTATTACACCAGGGACAGTGTTGATTCTTCTTGCTGGTCATTTCAAGGGAAAGAGAGTTGTGTTTCTTAAGCAGCTTCCTTCTGGGTTGCTTCTTGTAACTGGTCCTTTCAAGATTAACGGAGTTCCTTTGAGACGTGTGAATCAGGCCTATGTCATTGGCACATCAACCAAAGTAGATGTTTCTGCTGTTAACGTGGATAAATTTGATGACAAGTATTTCACAAAGGATTCCAGGAAAAAGAACAAGAAGGGAGAAGGAGAGTTCTTTGAGGCAGAGAAGGAGGAGAAAAATGTGCTCCCTCAGGAGAAGAAAGATGACCAGAAGACAGTGGATTCTGGTTTGTTGCAAGCCATTCAGAGTGTTCCAGACTTGAAAACTTATCTTGGTGCCAGATTTTCCTTGAAGTCGGGCCAGAAGCCTCATGAGCTCCTCTTCTAG 705 0.4383 MALPKQRTARVSRNPELIRGIGKYSRSKMYHKRGLWAIKAKNGGVLPRHEPKAKVAAPAEKAPKFYPADDVKKPLLNKHKPKPTKLRSSITPGTVLILLAGHFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDVSAVNVDKFDDKYFTKDSRKKNKKGEGEFFEAEKEEKNVLPQEKKDDQKTVDSGLLQAIQSVPDLKTYLGARFSLKSGQKPHELLF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0643 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Lal21g0643 234 PANTHER 60S RIBOSOMAL PROTEIN L6 4 234 - -
Lal21g0643 234 SUPERFAMILY Translation proteins SH3-like domain 87 178 IPR008991 -
Lal21g0643 234 Pfam Ribosomal protein L6, N-terminal domain 5 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Lal21g0643 234 Gene3D - 88 171 IPR014722 -
Lal21g0643 234 MobiDBLite consensus disorder prediction 180 199 - -
Lal21g0643 234 PANTHER 60S RIBOSOMAL PROTEIN L6 4 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Lal21g0643 234 CDD KOW_RPL6 82 234 IPR041997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0643 Lal-Chr21 4855879 4857405 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0643 5 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 79.130 2.93e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0643 K02934 - pvy:116113922 376.711