Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0620 ATGGAAGCTAATGGTGTTGATCCTTGTTCCTCTGAAGCTTCTAGCATTTCAGCCAATTCTAATGATCATAAGATGAATCAGAAAGAGAAGGGTTTAAAGTCTGAACTGGATCAAGCTTCAATTTCCAACTACTCCATGCAGCTTTTGGATTTCATGAAGCTTAGTTCCAATGATAATTCGGTTAGTGATTCAAGGGAAGAACTTGATTTATTAAACCAAAAAGGTAACAATAACGTGGTTGGTTCATCTTCTAGGGTTAATAATAACAATAACAACATTGCTGAAGTTACAGATGAAAACACAAAGATTGAGGCAAAGTCTTTCTCATGCAACTTTTGCAAGAGAGAGTTCTCTACTTCACAAGCTTTGGGAGGACACCAGAACGCGCATAAGCAAGAGCGCGCCCTTGCGAAACGACGTCAAGGCCTTGATGCTAGTAGTGGTTTTGGTCACCCTCATTATCCTTATTACCCTTCTTATCCGACCCTTTCGATTCATTCCTTTTATGGATCTTACAATAGGGCACTCGGGGTTCGAATGGATTCCATGATTCACAAGCCTTCCTACCCTTCTTGGGCATCACCTAATGGATTTAGTAGGTATGGTAGCCCTTGGTTAAGGCAAGGAGGCCAAGAGATGCTGAATTCTTCATCATCAACACTTGATAGGTTAAGAATTGAGGGTTTGCAATTGAAATCACAATCACAATCACATTGTGATAGTGGGGGACTTGGATTCTTAATCGGAACTAGTGCAACTTCAAGGCTAGAAGATAGTGATGGAAATAATGCTATTACTGGAACACTTTCCCTATCAACAAATATCGCTCCCACTTCATCAAGTCAAGTTATAAACAAACCAAGTCGATCATTAACAATCGGGGATCCTGCTCGAGAAGGAATTTCCAAAGCAGAATCTTATTCTGATGATCTTGATTTGTCACTGAAGCTTTAA 954 0.4004 MEANGVDPCSSEASSISANSNDHKMNQKEKGLKSELDQASISNYSMQLLDFMKLSSNDNSVSDSREELDLLNQKGNNNVVGSSSRVNNNNNNIAEVTDENTKIEAKSFSCNFCKREFSTSQALGGHQNAHKQERALAKRRQGLDASSGFGHPHYPYYPSYPTLSIHSFYGSYNRALGVRMDSMIHKPSYPSWASPNGFSRYGSPWLRQGGQEMLNSSSSTLDRLRIEGLQLKSQSQSHCDSGGLGFLIGTSATSRLEDSDGNNAITGTLSLSTNIAPTSSSQVINKPSRSLTIGDPAREGISKAESYSDDLDLSLKL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0620 317 MobiDBLite consensus disorder prediction 278 313 - -
Lal21g0620 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Lal21g0620 317 PANTHER ZINC FINGER PROTEIN JAGGED 7 317 IPR045320 GO:0003700
Lal21g0620 317 SUPERFAMILY beta-beta-alpha zinc fingers 105 135 IPR036236 -
Lal21g0620 317 Coils Coil 86 106 - -
Lal21g0620 317 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Lal21g0620 317 MobiDBLite consensus disorder prediction 8 22 - -
Lal21g0620 317 MobiDBLite consensus disorder prediction 1 34 - -
Lal21g0620 317 Gene3D Classic Zinc Finger 82 148 - -
Lal21g0620 317 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 7 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0620 Lal-Chr21 4675712 4676665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0620 49 188 C2H2 Transcription Factor Family AT5G10970 42.553 2.81e-23 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal21g0620 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0620 - - lang:109326376 397.127