Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0618 ATGAGTTCTTCTTCTTGGTCATCTTCAAATTGGGTAATAGAAAGTGGTGATGTTCCACATGTTTTGGCTGTTGATGACAACCTTATTGATCGTAAACTTGTTGAGAAGCTGCTTAGGAACTCTTCTTGCAAAGTTACTACTGCAGAAAATGGGCCAAGGGCATTGGAGTTTTTGGGCTTGACAAGTGGTGAACAGAACACCTTGAATGAAAGATCCAAAGTAAATTTGGTTATCACAGATTATTGCATGCCAGGAATGACAGGCTATGAGCTACTTAAGAAAATTAAGGAATCATCTATGATGAAGGAGGTTCCAGTTGTTATAATGTCATCTGAGAACATACCAACAAGGATTGACAAGTGTATGGAAGAAGGAGCTGAGATGTTCATGTTGAAGCCTCTCAAGCAATCTGATGTGAAAAAACTAACATGTGAGTTAATGAATAGGGGTTGTGAAATTTAA 462 0.381 MSSSSWSSSNWVIESGDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNTLNERSKVNLVITDYCMPGMTGYELLKKIKESSMMKEVPVVIMSSENIPTRIDKCMEEGAEMFMLKPLKQSDVKKLTCELMNRGCEI 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0618 153 SUPERFAMILY CheY-like 19 148 IPR011006 -
Lal21g0618 153 Gene3D - 17 151 - -
Lal21g0618 153 SMART REC_2 19 143 IPR001789 GO:0000160
Lal21g0618 153 Pfam Response regulator receiver domain 21 141 IPR001789 GO:0000160
Lal21g0618 153 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 149 IPR045279 GO:0009736
Lal21g0618 153 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 8 149 - -
Lal21g0618 153 ProSiteProfiles Response regulatory domain profile. 20 147 IPR001789 GO:0000160
Lal21g0618 153 CDD REC_typeA_ARR 21 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0618 Lal-Chr21 4644210 4646551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0618 20 148 Response Regulator Gene Family AT3G56380 73.282 9.38e-64 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal21g0618 Response_reg 2.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0618 K14492 - gmx:100778707 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0618 21 4644210 4646551 Lal21g0618 21 4644210 4646551 ECH
Lal18g1179 18 14685799 14686584 Lal21g0618 21 4644210 4646551 PCT
Lal22g0417 22 2703584 2704411 Lal21g0618 21 4644210 4646551 PCT
Lal6g0444 6 2802198 2803052 Lal21g0618 21 4644210 4646551 PCT